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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR06G07210.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | ERF | ||||||||
Protein Properties | Length: 346aa MW: 36625 Da PI: 6.3967 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60 | 5.4e-19 | 168 | 216 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+WvAeIr p++ r+r +lg+f+ aeeAa a+++a+ +l+g LPERR06G07210.1 168 YRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDAAEEAALAYDKAAFRLRG 216 9******9.**********965...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.3E-31 | 167 | 225 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.6E-35 | 167 | 230 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.24E-21 | 167 | 224 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.037 | 167 | 224 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.04E-32 | 168 | 224 | No hit | No description |
PRINTS | PR00367 | 2.0E-10 | 168 | 179 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.0E-12 | 168 | 216 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.0E-10 | 190 | 206 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 346 aa Download sequence Send to blast |
MATIDLYNYQ LSSSSSSSSS DQELMKALEP FIRSASPTST PTFTPFSTST STPFSYSSPL 60 PNLPQDSYYF PSLPLPPPPP PTTTSFSELP PLPPTSSSFI SPSPAAAGLT HLAPDQIEQI 120 QAQFFMQQQQ QRAMASSSVA SYLAPRAQPM KASAAAAGSS AGGGGKMYRG VRQRHWGKWV 180 AEIRLPKNRT RLWLGTFDAA EEAALAYDKA AFRLRGDAAH LNFPSLRRGG AHLAGPLHAS 240 IDAKLTAICH SLATAGAAPP SKKAAAAAAA AHPDSPKGSA STTTTTSECD ESAISAAFSP 300 PPPPAPPLPE MANLDFTEAP WDESDVFNLY KCPSREIDID WDSILS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 8e-21 | 165 | 224 | 3 | 63 | ATERF1 |
3gcc_A | 8e-21 | 165 | 224 | 3 | 63 | ATERF1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR06G07210.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015644288.1 | 1e-105 | ethylene-responsive transcription factor RAP2-13 | ||||
TrEMBL | A0A0D9WNF0 | 0.0 | A0A0D9WNF0_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR06G07210.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP382 | 35 | 203 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G78080.1 | 2e-34 | related to AP2 4 |