PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR06G03670.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family ERF
Protein Properties Length: 292aa    MW: 31824.4 Da    PI: 4.6403
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR06G03670.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.29.6e-19111161256
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                      +++GVr ++ +g++ AeIrdp   g++ r++lg+f+taeeAa+ ++ a+++l+g+
  LPERR06G03670.1 111 KFRGVRKRP-WGKYGAEIRDP---GRSERVWLGTFDTAEEAARVYDVAALRLRGP 161
                      89*******.**********8...545**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.1E-30110169IPR001471AP2/ERF domain
PROSITE profilePS5103223.815111168IPR001471AP2/ERF domain
PfamPF008471.5E-11111160IPR001471AP2/ERF domain
SuperFamilySSF541711.96E-21111169IPR016177DNA-binding domain
SMARTSM003801.0E-37111174IPR001471AP2/ERF domain
CDDcd000181.20E-30111170No hitNo description
PRINTSPR003672.1E-10112123IPR001471AP2/ERF domain
PRINTSPR003672.1E-10134150IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MADDAAMEDM FQFLMAMSSR FAADDTATAA AVEPRVVRVF CRDHDATDSS CSDEDTPRRD  60
RYRDRLFLRE IHVSPPIADM SSSSMANTGR RRVVGGPMRR SRREAAATER KFRGVRKRPW  120
GKYGAEIRDP GRSERVWLGT FDTAEEAARV YDVAALRLRG PSATTNFPVT TPPMTNHPPV  180
RAVTAASDDT SSSDESSSSQ LVGSPVSVLR PITAAANDGI CGAGDEFYRF AGDDVFCFGE  240
PAPAPLVFDE QYPVMMSSSS TLLDDLGDLP PWADVVDGFF SDVIGEPHPA AL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-2198168172Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1101118RREAAATERKFRGVRKRP
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00456DAPTransfer from AT4G27950Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR06G03670.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642210.25e-50ethylene-responsive transcription factor 11
TrEMBLA0A0D9WM680.0A0A0D9WM68_9ORYZ; Uncharacterized protein
STRINGLPERR06G03670.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP131332332
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11140.18e-27cytokinin response factor 1