PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR05G21720.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | WRKY | ||||||||
Protein Properties | Length: 620aa MW: 65272.4 Da PI: 7.4996 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 96.9 | 1.3e-30 | 366 | 424 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +v+++tYeg+Hnh+ LPERR05G21720.2 366 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAaGCPVRKQVQRCAEDRTVLITTYEGNHNHP 424 7***************************99****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.6E-33 | 350 | 426 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.07E-27 | 358 | 426 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.976 | 360 | 426 | IPR003657 | WRKY domain |
SMART | SM00774 | 9.7E-37 | 365 | 425 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.1E-26 | 367 | 424 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 620 aa Download sequence Send to blast |
MESMVGVKRK NVVVGGGDGR EMLPPSPAPA PVVEFPIGYQ SSSPTPRVVV GEMDFFKTAE 60 KRCDRKDVPP PPRLYVLPSP SAAAATLHGG SSPEDLSLNK DDLTINMGLQ VGRRKNRGSE 120 ESVIIDDGVS SNDEDHRPEA KPPLPLTKSE VIGRLSEENK MLKNSLSSLT TKYSSLHMQF 180 ISVMQQRRSI LGPPIHQQEL LDPEKKEQDG SQHQHQHQQQ LIPRQFISLG SASLQPDAVE 240 PPHSAAAAVA DVCALPPASN PDAAAAVPAM TMPLPHFEQQ HHHHPIHGGR ENGSRSPETD 300 HRRYHQQPEQ QLQHQLPPPP SWLHGDKVPK FLPGAGKCPD QPPVTEATMR KARVSVRARS 360 EAPMISDGCQ WRKYGQKMAK GNPCPRAYYR CTMAAGCPVR KQVQRCAEDR TVLITTYEGN 420 HNHPLPPAAV AMAQTTASAA SMLLSGSATS ADGSLMAGSN FLTHALLPCS STVATISASA 480 PFPTVTLDLT SPPPPPPPPS NPNPNSNSSA ATAALAEAAR PVALPQLFGQ KLYDQSKLSA 540 VQAVAGTKGS TGSDGGTGAH IADTVNAATA AIASDPNFTA VLAAALTSYI GSSSSGGGGG 600 VAAGGSSGGD SCSREDKIGE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 5e-22 | 356 | 426 | 8 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 5e-22 | 356 | 426 | 8 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR05G21720.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025881266.1 | 0.0 | probable WRKY transcription factor 31 | ||||
TrEMBL | A0A0D9WJV0 | 0.0 | A0A0D9WJV0_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR05G21720.1 | 0.0 | (Leersia perrieri) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G62300.1 | 1e-72 | WRKY family protein |