PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR05G21720.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family WRKY
Protein Properties Length: 634aa    MW: 66793.1 Da    PI: 7.6716
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR05G21720.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.91.4e-30366424259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +v+++tYeg+Hnh+
  LPERR05G21720.1 366 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAaGCPVRKQVQRCAEDRTVLITTYEGNHNHP 424
                      7***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.6E-33350426IPR003657WRKY domain
SuperFamilySSF1182901.11E-27358426IPR003657WRKY domain
PROSITE profilePS5081129.976360426IPR003657WRKY domain
SMARTSM007749.7E-37365425IPR003657WRKY domain
PfamPF031061.1E-26367424IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 634 aa     Download sequence    Send to blast
MESMVGVKRK NVVVGGGDGR EMLPPSPAPA PVVEFPIGYQ SSSPTPRVVV GEMDFFKTAE  60
KRCDRKDVPP PPRLYVLPSP SAAAATLHGG SSPEDLSLNK DDLTINMGLQ VGRRKNRGSE  120
ESVIIDDGVS SNDEDHRPEA KPPLPLTKSE VIGRLSEENK MLKNSLSSLT TKYSSLHMQF  180
ISVMQQRRSI LGPPIHQQEL LDPEKKEQDG SQHQHQHQQQ LIPRQFISLG SASLQPDAVE  240
PPHSAAAAVA DVCALPPASN PDAAAAVPAM TMPLPHFEQQ HHHHPIHGGR ENGSRSPETD  300
HRRYHQQPEQ QLQHQLPPPP SWLHGDKVPK FLPGAGKCPD QPPVTEATMR KARVSVRARS  360
EAPMISDGCQ WRKYGQKMAK GNPCPRAYYR CTMAAGCPVR KQVQRCAEDR TVLITTYEGN  420
HNHPLPPAAV AMAQTTASAA SMLLSGSATS ADGSLMAGSN FLTHALLPCS STVATISASA  480
PFPTVTLDLT SPPPPPPPPS NPNPNSNSSA ATAALAEAAR PVALPQLFGQ KLYDQSKLSA  540
VQAVAGTKGS TGSDGGTGAH IADTVNAATA AIASDPNFTA VLAAALTSYI GSSSSGGGGG  600
VAAGGSSGGD SCSREDKIGE LAAKHQSKYS GYGE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-22356426877Probable WRKY transcription factor 4
2lex_A5e-22356426877Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR05G21720.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025881266.10.0probable WRKY transcription factor 31
TrEMBLA0A0D9WJV00.0A0A0D9WJV0_9ORYZ; Uncharacterized protein
STRINGLPERR05G21720.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP126952734
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62300.11e-72WRKY family protein