PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR03G22530.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family HD-ZIP
Protein Properties Length: 864aa    MW: 94210 Da    PI: 6.6214
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR03G22530.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.83.9e-183895457
                     -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
         Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                       ++t+eq+e+Le+++ ++++ps  +r++L + +    +++ +q+kvWFqNrR +ek+
  LPERR03G22530.1 38 YVRYTPEQVEALERVYSECPKPSSLRRQQLIRDCpilsNIEPKQIKVWFQNRRCREKQ 95
                     6789****************************************************97 PP
2START174.37.4e-551863932204
                      HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEE CS
            START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galql 93 
                      +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s+++sg a+ra+g+v  +++  v+e+l+d++ W ++++ +++l vi +g  g+++l
  LPERR03G22530.1 186 IAEETLAEFLSKATGTAVDWVQMVGMKPGPDSIGIIAVSHNCSGVAARACGLVSLEPT-KVAEILKDRLSWYRDCRCVDVLHVIPTGngGTIEL 278
                      68999*****************************************************.8999999999************************* PP

                      EEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHH CS
            START  94 mvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrs 183
                      ++++++a+++l++ Rdf+++Ry+  l++g++vi+++S+++ +  p+   ++++vRae+lpSg+li+p+++g+s +++v+hvdl++++++++lr+
  LPERR03G22530.1 279 IYMQTYAPTTLAApRDFWVLRYTSGLEDGSLVICERSLTQSTGGPSgpnTPNFVRAEVLPSGYLIRPCEGGGSMIHIVDHVDLDAWSVPEVLRP 372
                      ***********999****************************9999999********************************************* PP

                      HHHHHHHHHHHHHHHHTXXXX CS
            START 184 lvksglaegaktwvatlqrqc 204
                      l++s  + ++k++ a+l++ +
  LPERR03G22530.1 373 LYESPKILAQKMTIAALRHIR 393
                      ****************99865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-181595IPR009057Homeodomain-like
PROSITE profilePS5007115.243296IPR001356Homeobox domain
SMARTSM003898.5E-1534100IPR001356Homeobox domain
SuperFamilySSF466892.1E-163699IPR009057Homeodomain-like
CDDcd000861.63E-153797No hitNo description
PfamPF000469.8E-163895IPR001356Homeobox domain
CDDcd146861.84E-689128No hitNo description
PROSITE profilePS5084826.98176376IPR002913START domain
CDDcd088752.65E-68180396No hitNo description
Gene3DG3DSA:3.30.530.207.5E-24184376IPR023393START-like domain
SMARTSM002341.4E-47185395IPR002913START domain
PfamPF018521.5E-52186393IPR002913START domain
SuperFamilySSF559611.51E-38186396No hitNo description
PfamPF086702.0E-51721863IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009855Biological Processdetermination of bilateral symmetry
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010072Biological Processprimary shoot apical meristem specification
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 864 aa     Download sequence    Send to blast
MAAAMVAAVH GGRQQQQEMR ERASPGSGGA PQVDTGKYVR YTPEQVEALE RVYSECPKPS  60
SLRRQQLIRD CPILSNIEPK QIKVWFQNRR CREKQRKEAS RLQTVNRKLT AMNKLLMEEN  120
DRLQKQVSRL VYENGYMRQQ LHNPSVATTD TSCESVVTSG QHHQQQNPAA TRPQRDANNP  180
AGLLAIAEET LAEFLSKATG TAVDWVQMVG MKPGPDSIGI IAVSHNCSGV AARACGLVSL  240
EPTKVAEILK DRLSWYRDCR CVDVLHVIPT GNGGTIELIY MQTYAPTTLA APRDFWVLRY  300
TSGLEDGSLV ICERSLTQST GGPSGPNTPN FVRAEVLPSG YLIRPCEGGG SMIHIVDHVD  360
LDAWSVPEVL RPLYESPKIL AQKMTIAALR HIRQIAHESS GEMPYGGGRQ PAVLRTFSQR  420
LSRGFNDAVN GFPDDGWSLM SSDGAEDVTI AFNSSPNKLV GSHVNSSQLF SAIGGGILCA  480
KASMLLQNVP PALLVRFLRE HRSEWADPGV DAYSAAALRA SPYAVPGLRA GGFMGSQVIL  540
PLAHTLEHEE FLEVIRLEGH SLCHDEVVLS RDMYLLQLCS GVDENAAGAC AQLVFAPIDE  600
SFADDAPLLP SGFRVIPLDA KTDAPSATRT LDLASTLEVG SGGTTRTSSD TSSSSNTRSV  660
LTIAFQFSYE NHLRESVAAM ARQYVRTVVA SVQRVAMAIA PSRLGGQIET KNPPGSPEAH  720
TLARWIGRSY RFHTGADLLR TESQSTDSSL KAMWQHSDSI MCCSLKAAPV FTFANQAGLD  780
MLETTLIALQ DISLEKILDD DGRKALCSEF PKIMQQGFAY LPGGVCVSSM GRPVSYDQAV  840
AWKVLSDDDT PHCLAFMFVN WSFV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR03G22530.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1032840.0AK103284.1 Oryza sativa Japonica Group cDNA clone:J033124M18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015632484.10.0homeobox-leucine zipper protein HOX32
SwissprotQ6AST10.0HOX32_ORYSJ; Homeobox-leucine zipper protein HOX32
TrEMBLA0A0D9VWR30.0A0A0D9VWR3_9ORYZ; Uncharacterized protein
STRINGLPERR03G22530.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37438197
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Itoh J,Hibara K,Sato Y,Nagato Y
    Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice.
    Plant Physiol., 2008. 147(4): p. 1960-75
    [PMID:18567825]
  3. Li YY, et al.
    Overexpression of OsHox32 Results in Pleiotropic Effects on Plant Type Architecture and Leaf Development in Rice.
    Rice (N Y), 2016. 9(1): p. 46
    [PMID:27624698]