PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR03G07880.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | NAC | ||||||||
Protein Properties | Length: 850aa MW: 95280.5 Da PI: 5.4491 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 33.5 | 1.2e-10 | 70 | 183 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 lp+G++F+P+d++l+ +L+++v + + + +i+e+ i +v+ +++ + yfF+k+ k + +++ + t+ W+++ + +++ LPERR03G07880.1 70 LPRGVEFNPSDSDLL-WHLAAEVGNGQACRHPFIDEF-IKSVD--------ETDGRVSYFFHKNFKVCN--SENGKCTS---WQKSENPISIIL 148 699************.789999999886554556664.44443........2345678*****998875..45666666...************ PP NAM 95 kkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 +g+ g+k+ +v+y + + ++++ tdW h+y++ LPERR03G07880.1 149 -DGNIQGCKEEFVLYayETDGNSPQVTDWRWHQYHI 183 .999**********977667788889********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.79E-19 | 63 | 201 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 12.971 | 70 | 201 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.6E-7 | 71 | 183 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 850 aa Download sequence Send to blast |
MAKEVAPPPS PSPCLDSDAE DVPLSVRRRR LLRPQAQRVD SKPPATERRD ASAEAVEGAG 60 GAAQQGWPGL PRGVEFNPSD SDLLWHLAAE VGNGQACRHP FIDEFIKSVD ETDGRVSYFF 120 HKNFKVCNSE NGKCTSWQKS ENPISIILDG NIQGCKEEFV LYAYETDGNS PQVTDWRWHQ 180 YHIKSTEKGE GELVVSKIFY KSENNNFKWA EKAHAQSALD ASATDDDSKE ELRLENHSSK 240 MVIESNENKQ KQIQKETCPD QSKLIPFNMA DNMSIGNQIN DHDEIKELDH MSLQERYRIL 300 LAEKHSCSAV VSFEQCAIDG TENSCRPETS GLIPKRIHEG TPFRDGMHSM LQEISSGPPS 360 IDSIGNDNNR MLLAEGLANN QQSQESGCVS GLLSMSSPAV PPQCQVVCSH DLLVNGNTLI 420 YSGEPSSSLT PTFGDESIQL KGTEDRTFLV DVKLEPVLEG NSSHVEGLLP SLRIKNEVTG 480 NELPLIICGL TSMNTAELTA KKKNTVNHDG ALAYCSQKRK GRKTVRNPSE KTLEECSDRN 540 GEDTTYFSRR KRRRKTATDS IETALEEDAP GLLQILIDRG ILVNEIKLYG VEEDDDMVPD 600 CTESDFQDLE NVITKLFPQR TSLLKLAARQ VKGEKAIYCL TCLISLIEQS RYLQFRDCPV 660 EWGWCRDLQS FIFIFKSHNR IVLERPEYGY ATYFFEIVKS LPIEWQIQRL VTAMKLSGCG 720 RTALIENKPL VVGEDLTEGE ARVLEEYGWL PNSGLGTMLN YRDRVVHDRW NEKSVTDWRT 780 KIGKLLMSGY SEGHLVLSHI PTKVGKLEED TEIRATGSSY QPSLRSTVPN LAAVRGMKIS 840 RLMIPGRMRK |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 548 | 554 | RRKRRRK |
2 | 549 | 553 | RKRRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR03G07880.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK105283 | 0.0 | AK105283.1 Oryza sativa Japonica Group cDNA clone:001-116-E01, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015632079.1 | 0.0 | uncharacterized protein LOC4332096 | ||||
TrEMBL | A0A0D9VRB8 | 0.0 | A0A0D9VRB8_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR03G07880.2 | 0.0 | (Leersia perrieri) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25580.1 | 3e-27 | NAC family protein |