![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | LPERR03G05410.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 278aa MW: 29838.7 Da PI: 5.0289 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59 | 1.1e-18 | 70 | 120 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y GVr+++ +g+W+AeIrdp+e r++lg+f tae Aa a++aa++ l+g LPERR03G05410.1 70 SKYWGVRRRP-WGKWAAEIRDPVE---GVRVWLGTFATAESAALAYDAAARHLRG 120 79********.**********866...3***********************9997 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.5E-11 | 70 | 120 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.24E-21 | 70 | 129 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 3.45E-18 | 70 | 128 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 2.8E-30 | 71 | 130 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.3E-32 | 71 | 134 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.011 | 71 | 128 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.6E-9 | 72 | 83 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.6E-9 | 94 | 110 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 278 aa Download sequence Send to blast |
MCGGAILANI IPTTPAASAA ARRVTVGNRR KVRDDDNDFD LEAAFQRFDR RRDDSHDEAK 60 KKKKSARPAS KYWGVRRRPW GKWAAEIRDP VEGVRVWLGT FATAESAALA YDAAARHLRG 120 DNSKLNFPSS SSTTRRRKRR NTVCAIAGED GHVATAQSPS SSVITSESSG ISSLPDFSWQ 180 GISADQPFAA AVELAGGDEE VITASSIDDN NNNSNNHSGA GDLLMFDDPF LFGDMFDDGG 240 ALFGASLMDG GDAGNNVNVA GESMMGLWSF GDDGTYYN |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 5e-19 | 72 | 128 | 6 | 63 | ATERF1 |
3gcc_A | 5e-19 | 72 | 128 | 6 | 63 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 49 | 63 | RRRDDSHDEAKKKKK |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | LPERR03G05410.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC079633 | 1e-63 | AC079633.9 Genomic Sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0032G08, from Chromosome 3, complete sequence. | |||
GenBank | AP014959 | 1e-63 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015630586.1 | 1e-51 | ethylene-responsive transcription factor ERF073 | ||||
TrEMBL | A0A0D9VQC3 | 0.0 | A0A0D9VQC3_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR03G05410.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4371 | 26 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G16770.1 | 5e-18 | ethylene-responsive element binding protein |