PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR02G31310.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family C2H2
Protein Properties Length: 343aa    MW: 35490.2 Da    PI: 8.2985
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR02G31310.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.10.00058131153123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      y+C+ C+k+F++   L  H  +H
  LPERR02G31310.1 131 YECKTCNKCFPTFQALGGHRASH 153
                      99**********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.14E-8130153No hitNo description
PfamPF139122.0E-11130155IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.097131158IPR007087Zinc finger, C2H2
SMARTSM003550.094131153IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280133153IPR007087Zinc finger, C2H2
SuperFamilySSF576672.14E-8232259No hitNo description
PfamPF139129.7E-13236260IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.471237264IPR007087Zinc finger, C2H2
SMARTSM003550.026237259IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280239259IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MSVDDKQQQL AGGGGVVKRK RTKRPRHHHA PASPASSSES TTTEEEDMAN CLILLAQGAA  60
VLHADSNPST TPPPMAQPPS PAPVIAATAP APVKSEAKVL PQSLKSERYT SRKYTEAATT  120
ADGVKAGFYV YECKTCNKCF PTFQALGGHR ASHKKPRLAA AADDDNTNNA ATVNSNPPPM  180
TITMTTTMTS SPPPPPPQAD VSAVPEVTTV LSLNNNNISV AVAGAGSGVM ARKLRVHECS  240
ICGAEFGSGQ ALGGHMRRHR PLHPTPAPAM TVTAIAAAAA ADAKKEGSSS INLELDLNLP  300
APSDEESVSP PPPPVLLALA GKFDDGKKPL LLTSSAALVG CHY
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00487DAPTransfer from AT5G04390Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR02G31310.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0039899e-59AP003989.4 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1063_D06.
GenBankAP0040269e-59AP004026.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1136_C04.
GenBankAP0149589e-59AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankCP0126109e-59CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623775.11e-112zinc finger protein ZAT5
TrEMBLA0A0D9VMW10.0A0A0D9VMW1_9ORYZ; Uncharacterized protein
STRINGLPERR02G31310.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20133285
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04390.11e-35C2H2 family protein