PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR02G26860.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | ERF | ||||||||
Protein Properties | Length: 232aa MW: 25211.4 Da PI: 8.2535 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64.5 | 2.2e-20 | 62 | 111 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+WvAeIr p++ r+r +lg+f+tae+Aa a+++a+ +l+g LPERR02G26860.1 62 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEDAALAYDKAAFRLRG 111 59******9.**********965...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.21E-31 | 61 | 119 | No hit | No description |
SMART | SM00380 | 9.6E-38 | 62 | 125 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.077 | 62 | 119 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.15E-23 | 62 | 119 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.3E-32 | 62 | 120 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.2E-11 | 63 | 74 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.0E-13 | 63 | 111 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.2E-11 | 85 | 101 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009611 | Biological Process | response to wounding | ||||
GO:0009736 | Biological Process | cytokinin-activated signaling pathway | ||||
GO:0009873 | Biological Process | ethylene-activated signaling pathway | ||||
GO:0010017 | Biological Process | red or far-red light signaling pathway | ||||
GO:0045595 | Biological Process | regulation of cell differentiation | ||||
GO:0071472 | Biological Process | cellular response to salt stress | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
MGLTHLGPAQ IQQIQAQFLA QQQRQQRGLA GAFLGPRGQP MKQSGSPPHV ATAFAPAAQS 60 KLYRGVRQRH WGKWVAEIRL PKNRTRLWLG TFDTAEDAAL AYDKAAFRLR GDLARLNFPS 120 LRRGGAHLAG PLHASVDAKL TAICNSLATK NTPAESAASA AEEPDSPKCS ASTEGEESVS 180 AGSPPPPTTP PLSPPVPEME KLDFTEAPWD ESETFHLRKY PSWEIDWDSI LS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 5e-23 | 58 | 119 | 1 | 63 | ATERF1 |
3gcc_A | 5e-23 | 58 | 119 | 1 | 63 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00026 | PBM | Transfer from AT1G78080 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR02G26860.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK105877 | 0.0 | AK105877.1 Oryza sativa Japonica Group cDNA clone:001-204-C05, full insert sequence. | |||
GenBank | AK105991 | 0.0 | AK105991.1 Oryza sativa Japonica Group cDNA clone:001-205-H01, full insert sequence. | |||
GenBank | AP004119 | 0.0 | AP004119.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1288_G09. | |||
GenBank | AP014958 | 0.0 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012610 | 0.0 | CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025807978.1 | 1e-114 | ethylene-responsive transcription factor ERF060-like | ||||
Swissprot | Q8H1E4 | 2e-66 | RAP24_ARATH; Ethylene-responsive transcription factor RAP2-4 | ||||
TrEMBL | A0A0D9VL52 | 1e-168 | A0A0D9VL52_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR02G26860.1 | 1e-169 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP382 | 35 | 203 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G78080.1 | 2e-49 | related to AP2 4 |
Publications ? help Back to Top | |||
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