PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR02G18350.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family ERF
Protein Properties Length: 328aa    MW: 34827.8 Da    PI: 6.6922
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR02G18350.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.72.5e-173585155
              AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                     ++y+GVr+++ +gr++AeIrdp     +  r +lg+f+tae+Aa a++ a+++++g
  LPERR02G18350.1 35 TRYRGVRRRP-WGRFAAEIRDPA----SkERRWLGTFDTAEQAACAYDVAARAMRG 85
                     68********.**********83....25999**********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.0E-103585IPR001471AP2/ERF domain
CDDcd000181.79E-293594No hitNo description
PROSITE profilePS5103223.1823693IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-223694IPR016177DNA-binding domain
SMARTSM003802.2E-353699IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-303693IPR001471AP2/ERF domain
PRINTSPR003673.5E-93748IPR001471AP2/ERF domain
PRINTSPR003673.5E-95975IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0009880Biological Processembryonic pattern specification
GO:0010084Biological Processspecification of organ axis polarity
GO:0048825Biological Processcotyledon development
GO:0051726Biological Processregulation of cell cycle
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MDDAAASAHA HQHRAKRPSP GGADGGAIVG SATGTRYRGV RRRPWGRFAA EIRDPASKER  60
RWLGTFDTAE QAACAYDVAA RAMRGTRART NFPVPSSAAV VSPAGGCWPW LTALPPSPHG  120
ATTATATQQQ PLNTFLLHNL LMSSSPHGCL LLHHAGHGHA HAHAHSHIRS HNPTRTPIST  180
PTPTPTPTPP VAITTPATTT TTTTAAGSAT FAAPGAYDDD DDEWGGLLRR EPPEAGLLQE  240
VLHGFYPANR PHASPVPAPK QVEMPYYEAS PWDVVEDCED GDVDDDGEYC GLPMMPQGLL  300
EDVIHCPPPY MEVLAPSSAI GRSRRGGT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-203294164ATERF1
3gcc_A2e-203294164ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00623PBMTransfer from PK19363.1Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR02G18350.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0040235e-79AP004023.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1126_D09.
GenBankAP0040795e-79AP004079.2 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1067_B01.
GenBankAP0149585e-79AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankCP0126105e-79CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624483.13e-79ethylene-responsive transcription factor ABI4
TrEMBLA0A0D9VHS20.0A0A0D9VHS2_9ORYZ; Uncharacterized protein
STRINGLPERR02G18350.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP72633050
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12980.16e-13ERF family protein