PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR02G09570.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family WRKY
Protein Properties Length: 348aa    MW: 36755.8 Da    PI: 4.7688
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR02G09570.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.54.2e-31163221259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                       D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers+ dp++++ tY+geHnh+
  LPERR02G09570.1 163 ADVWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRADPNTFILTYTGEHNHS 221
                      69*************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-31148223IPR003657WRKY domain
PROSITE profilePS5081133.591157223IPR003657WRKY domain
SuperFamilySSF1182902.75E-26160223IPR003657WRKY domain
SMARTSM007742.1E-37162222IPR003657WRKY domain
PfamPF031065.3E-26164220IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007263Biological Processnitric oxide mediated signal transduction
GO:0009739Biological Processresponse to gibberellin
GO:0010150Biological Processleaf senescence
GO:0010200Biological Processresponse to chitin
GO:0042742Biological Processdefense response to bacterium
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MEEELCFGGG NNNWDLSAVV RLGCCRRRIS PASASDPFAS FLLPPVMEVS VEKEMAGVDA  60
AGWSFPELSA GDGAGLGRDA DELLKAFCAS FHSSSPPPLT EQPKEEQKPV LVPENLPVQT  120
SAPARSPAAA AVRQVAGGVP RSKRRKNQQK KVVRHVPADG VSADVWAWRK YGQKPIKGSP  180
YPRGYYRCSS SKGCPARKQV ERSRADPNTF ILTYTGEHNH SAPTHRNSLA GTTRNKLSPS  240
SSSASAAAAQ PQQPPPSVVV AGTAESAAAA GLSPTTPLRT PSMEEDEEED VDDELLVEDM  300
EMAGEDELLF LNGGGGGGDG DATAVSSLFD IDEPAFLPSP WTEQAAGS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B1e-19146224280Disease resistance protein RRS1
5w3x_D1e-19146224280Disease resistance protein RRS1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00561DAPTransfer from AT5G52830Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR02G09570.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623400.11e-134probable WRKY transcription factor 27
TrEMBLA0A0D9VEI00.0A0A0D9VEI0_9ORYZ; Uncharacterized protein
STRINGLPERR02G09570.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP53583361
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.14e-44WRKY family protein