PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR01G20030.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family WRKY
Protein Properties Length: 350aa    MW: 37059.6 Da    PI: 6.4257
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR01G20030.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY856.9e-27177235259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      +D ++WrKYGqK++kgs++pr+YY+C+s  gC+++k vers   p ++++tY  eH h+
  LPERR01G20030.1 177 SDLWAWRKYGQKPIKGSPYPRGYYKCSSMkGCMARKMVERSPAKPGMLVVTYMAEHCHP 235
                      799***********************9988***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081130.377171237IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.4E-27172237IPR003657WRKY domain
SuperFamilySSF1182901.24E-24174237IPR003657WRKY domain
SMARTSM007741.6E-32176236IPR003657WRKY domain
PfamPF031061.1E-22178235IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MRGASPLRIV VVMDHFNDWD LQAVVRSCSF PQPEQRAAPE AAGRTTPAVV ASAATTTPAR  60
GVDPPARAGT AKATSVLCNL EYLDLDHKPF LLTGTSTTSA SSRARGREDG GSKHEVIISF  120
PAAAAAAAAS TSGAQPRSPT GGGRKPGIRT PRPKRSKKSQ LKKVVYEVPV ADGGVSSDLW  180
AWRKYGQKPI KGSPYPRGYY KCSSMKGCMA RKMVERSPAK PGMLVVTYMA EHCHPVPTQL  240
NALAGTTRHK SAPAEDDHQT TTTTTGSHEA GPAAGEAAAG EGVVKCEDVD GNELSETMAA  300
AAVDDDSEFW LEGMGLELEL DEFLGPVDDD VFDHVFEEED GGVLGRRLSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B1e-20158238280Disease resistance protein RRS1
5w3x_D1e-20158238280Disease resistance protein RRS1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR01G20030.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1114161e-155AK111416.1 Oryza sativa Japonica Group cDNA clone:002-182-G03, full insert sequence.
GenBankAY8706011e-155AY870601.1 Oryza sativa (japonica cultivar-group) WRKY12 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015640600.11e-143WRKY transcription factor 22
TrEMBLA0A0D9V3400.0A0A0D9V340_9ORYZ; Uncharacterized protein
STRINGLPERR01G20030.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42793070
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.17e-39WRKY family protein