PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR01G17270.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

HSF

Protein Properties

Length: 385aa MW: 42581.6 Da PI: 7.3408

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR01G17270.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	99.9	2.4e-31	76	172	2	103
HHHHHHHHHCTGGGTTTSEES..SSS..SEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS HSF_DNA-bind 2 Flkklyeiledeelkelisws..eng..nsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 F+ k+ye++ +++++ ++sws +g +sfvv+d++ +a vLp++Fkh nf+SFvRQLn+YgF+kv+ ++ weF+++ F +g+k LPERR01G17270.1 76 FVAKTYEMVAESATDAVVSWSwgPDGvgSSFVVWDPHALAAGVLPRFFKHANFSSFVRQLNTYGFRKVNPDR---------WEFANEAFLAGQK 160 9*****************97655456*************************************999.........********* PP XXXXXXXXXXXX CS HSF_DNA-bind 92 ellekikrkkse 103 +ll++ikr++ + LPERR01G17270.1 161 HLLKNIKRRRVS 172 ******9865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	3.0E-33	72	169	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	9.6E-51	72	169	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	1.09E-29	72	169	IPR011991	Winged helix-turn-helix DNA-binding domain
PRINTS	PR00056	3.3E-9	76	99	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	2.2E-27	76	169	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	119	143	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	3.3E-9	131	143	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 385 aa Download sequence Send to blast
MASPSSSSSL CRLLIRRPTC YSSGARGAGP GGEGMAAAVK REVKPEAEAE VGPRWGEVVP 60 VPRPMEGLGE AGPAPFVAKT YEMVAESATD AVVSWSWGPD GVGSSFVVWD PHALAAGVLP 120 RFFKHANFSS FVRQLNTYGF RKVNPDRWEF ANEAFLAGQK HLLKNIKRRR VSKPIMDLQL 180 KNKTSVVVGQ PEALGEVRSL KRDRAALRAE VIMLKKQYNN CKSQLIAMEE MVLNIERKQQ 240 QTVNFFARVL TNPVFVQQVL LNYVKKNGLR GTTKRQRLME NEKQHTDLPL NKGTEAASAM 300 AANVSAWCTG CSTVGEDEAT LKCNTQNIDN MCDDVWEELG ALPETGMEQE DKAGIGFDVE 360 EFVGRPCGWV DDCPYLVEPM QFVEH

Sequence ? help Back to Top

Protein Sequence Length: 385 aa Download sequence Send to blast

MASPSSSSSL CRLLIRRPTC YSSGARGAGP GGEGMAAAVK REVKPEAEAE VGPRWGEVVP  60
VPRPMEGLGE AGPAPFVAKT YEMVAESATD AVVSWSWGPD GVGSSFVVWD PHALAAGVLP  120
RFFKHANFSS FVRQLNTYGF RKVNPDRWEF ANEAFLAGQK HLLKNIKRRR VSKPIMDLQL  180
KNKTSVVVGQ PEALGEVRSL KRDRAALRAE VIMLKKQYNN CKSQLIAMEE MVLNIERKQQ  240
QTVNFFARVL TNPVFVQQVL LNYVKKNGLR GTTKRQRLME NEKQHTDLPL NKGTEAASAM  300
AANVSAWCTG CSTVGEDEAT LKCNTQNIDN MCDDVWEELG ALPETGMEQE DKAGIGFDVE  360
EFVGRPCGWV DDCPYLVEPM QFVEH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	1e-20	54	169	9	129	Heat shock factor protein 1
5d5v_B	1e-20	54	169	9	129	Heat shock factor protein 1
5d5v_D	1e-20	54	169	9	129	Heat shock factor protein 1
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	162	168	LKNIKRR
2	166	170	KRRRV

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR01G17270.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK064271	0.0	AK064271.1 Oryza sativa Japonica Group cDNA clone:002-105-E08, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006644301.1	0.0	PREDICTED: heat stress transcription factor A-6a
Swissprot	Q657C0	0.0	HFA6B_ORYSJ; Heat stress transcription factor A-6a
TrEMBL	A0A0D9V254	0.0	A0A0D9V254_9ORYZ; Uncharacterized protein
STRING	LPERR01G17270.1	0.0	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP308	37	231

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26150.1	1e-77	heat shock transcription factor A2

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Chauhan H,Khurana N,Agarwal P,Khurana P Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress. Mol. Genet. Genomics, 2011. 286(2): p. 171-87 [PMID:21792744]