PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR01G06800.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family M-type_MADS
Protein Properties Length: 730aa    MW: 80730.6 Da    PI: 4.723
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR01G06800.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF37.82.4e-121652339
                     --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEE CS
           SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevavii 39
                     ++n + r +tf kRrng++K A+ LS+L++a +av++
  LPERR01G06800.1 16 VDNLRERDITFFKRRNGLFKAASDLSILTGASIAVVL 52
                     688999*****************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.3E-6666IPR002100Transcription factor, MADS-box
CDDcd002667.97E-17972No hitNo description
SuperFamilySSF554557.19E-131084IPR002100Transcription factor, MADS-box
PROSITE profilePS5006613.5121466IPR002100Transcription factor, MADS-box
PfamPF003191.3E-131758IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 730 aa     Download sequence    Send to blast
MANQPRRARR TGSEYVDNLR ERDITFFKRR NGLFKAASDL SILTGASIAV VLEDRNREKY  60
HAVGTPTVEK VVNAVLSSDN MEVTEPLVDE QTNARLTALE NELALVTEES VRKEETTQAS  120
KDRYKKVQKE EEDDDENDLK MKRLFFPKSN NLELDQINEL FTEILQIREQ VRERLPPLNG  180
NGRRGESTLL NFGGSRVPPR ARPPRPAQWR PSAAAQWRRT AAAQWQQTAA AQWRPPQLSN  240
RFGSRNRQLH VGSSSSSSAP FVADRALPPP PAPPVTRGSL LIPELPPPAT PGSPWGHLLP  300
LKSPRFAPGT EPPYFGIQAQ QAQAHVNNQL QPEPLQMPVE NHFAPQAHVN NQVATLSTIL  360
GQPGPLQMPV ENHFPPQAPL MQGTLPFSNQ APAFAPVSAP LQMHVEDYPV SPLLQEQFSY  420
PDQAPQFAPM PVSSEMPMQA NFPHSQLMQD PVPFSNEAPV VVPPQASLQM PVEAHFPNSQ  480
LLQQPLTYTN QAPQFAPMPV SSEMPMQANF PHFQLMQQPL TYTNQAPQFA PMPVSSEMPM  540
QANFPHSQLM QQPVSFSNEA PVVAPPPAPL QMTLSQSQMP VEAHMPLQAQ LYQEPFLVPV  600
QAPVNDPPQA PLQMPMEDHQ PPAAEVYNQE VAEHQHLPQG YENNGNRIEI VEPSQPLAAT  660
GANDDGSSAV TNDNLFSIQQ WADSPFYDEQ FYLSVALDGG VPETDLANIE QASSTGLGNG  720
ITDEELHAGN
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR01G06800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D9UY900.0A0A0D9UY90_9ORYZ; Uncharacterized protein
STRINGLPERR01G06800.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP155501117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.11e-08AGAMOUS-like 61