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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
LPERR01G05820.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family |
bHLH |
Protein Properties |
Length: 394aa MW: 41268 Da PI: 7.9396 |
Description |
bHLH family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
LPERR01G05820.1 | genome | OGE | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HLH | 37.9 | 3.2e-12 | 220 | 265 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
h + Er+RR+++N++f L+++lP+ K +K +iL +A eY+ksL+
LPERR01G05820.1 220 HMISERKRREKLNDSFVALKSVLPPG-----SKKDKTSILIRAREYVKSLE 265
8899********************95.....4999**************96 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 394 aa
Download sequence Send
to blast |
MESSSWIHGG YAHANGASNN GFMCGYASSC SPGEFQLKEQ QQQQQLVSSQ IQHHLNQISM 60 HMSMDDDQST VYDGAAMDDL FIPSGSFPSS SSSSASYRST SVSYSADTSP ATAAPHVLGA 120 PAPAAGFIQF PEVSSHAPPY TGFSPPAASG GAFRRYARHL GPRRAVAKSG GGQRMFKTAM 180 SVLSKMHVAA MAYSRQCYYQ QQQAAAAAAE AAPSGNQLQH MISERKRREK LNDSFVALKS 240 VLPPGSKKDK TSILIRAREY VKSLESKLSE LEEKNRELEA RLASTAAPPA AAAATVEKGE 300 EIVEIEVTSA GAGAGAGANG EDQESTCTLN VAVTTPPATS RGGGGGMSTT DVVLRTLQCL 360 REQIGDGASL VAMSTSAGSG GRPPRANLTL QLKV
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Nucleic Localization
Signal ? help
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No. |
Start |
End |
Sequence |
1 | 223 | 228 | ERKRRE |
2 | 224 | 229 | RKRREK |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AK102964 | 4e-92 | AK102964.1 Oryza sativa Japonica Group cDNA clone:J033115I17, full insert sequence. |
GenBank | HQ858870 | 4e-92 | HQ858870.1 Oryza sativa Japonica Group isolate UT1679 bHLH transcription factor mRNA, partial cds. |