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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
LOC_Os06g37410.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family |
bHLH |
Protein Properties |
Length: 566aa MW: 59620.6 Da PI: 7.9652 |
Description |
bHLH family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
LOC_Os06g37410.1 | genome | MSU | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HLH | 49.2 | 9.5e-16 | 326 | 372 | 5 | 54 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
h + ErrRR+riN++f++Lr llP + p+ K +Ka+iL ++eY+ +L
LOC_Os06g37410.1 326 HMISERRRRERINDSFQTLRALLPLP---PDSKKDKAAILASTTEYMDKL 372
8899**********************...*****************9876 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 566 aa
Download sequence Send
to blast |
MGRAAARLPG CLYLCLWAPA AAIAGGVQPN HLFCLDAWIG GGGGVGAGGG GGDRALELFE 60 AYRGALCAAV SGCVPGWAYK EGAACMELTE HDLAASASLQ VQQQFYHETG TKMAVFMGCD 120 SGEIEVGLSA ASATATAAVV GEMQQSILEE LLQMPPPPPS PSSSSLLSLS VGSPEYSSLV 180 RSMATSVGAS AAADPSPVHG GLLAPVYGEF PGSDDDAAMA QAMLAVISTP APPPPLWRPP 240 RRRARSSSSP RRATAFKAYN AALSPRARPR PGAPGQRMIK TGISLLASVH MQTRSRELAA 300 ARQRDTHAAP PPPPPPPPPS SSQLHHMISE RRRRERINDS FQTLRALLPL PPDSKKDKAA 360 ILASTTEYMD KLISQVSELG EKNRQLEAQL AARSGEAQWP AASGGGGGES SSERVQVDVV 420 IAGSSASTDQ PREVSIRVTV RAECDVSELV VAVLARLREM GRFAVVSVDA GRRSSSFAQA 480 SLTFRVMNYK YKTNSVTVGK SQLIVHTEKY KAGDVCDETS LKEAVAKAVD GAAFFKFQRT 540 PFMHSKNYDQ SDDLEGEAKL LPLDS*
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Nucleic Localization
Signal ? help
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No. |
Start |
End |
Sequence |
1 | 239 | 245 | PRRRARS |
2 | 329 | 334 | ERRRRE |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AP005460 | 0.0 | AP005460.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0610D01. |
GenBank | AP014962 | 0.0 | AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence. |