PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os05g34940.1 | ||||||||
Common Name | MADS4, OJ1212_B02.5, Os05g0423400 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 216aa MW: 24908.5 Da PI: 9.0978 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 85.8 | 2.6e-27 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien++nrqvtfskRr+gilKKA E+ vLCdaev v+ifss gkl +y++ LOC_Os05g34940.1 9 KRIENSTNRQVTFSKRRAGILKKAREIGVLCDAEVGVVIFSSAGKLSDYCT 59 79***********************************************96 PP | |||||||
2 | K-box | 67.7 | 3.9e-23 | 76 | 172 | 1 | 97 |
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenka 93 yq++sgk l+++k++sl+ e++++kke++n+q e+Rh++GedL+sL+ keL +e++L+++ + R+k +++++++ ++ ++ e+e++ + LOC_Os05g34940.1 76 YQTNSGKILWDEKHKSLSAEIDRVKKENDNMQIELRHMKGEDLNSLQPKELIAIEEALNNGQANLRDKMMDHWRMHKRNEKMLEDEHKMLAFR 168 89999999************************************************************9988888888888888887777666 PP K-box 94 Lrkk 97 +++ LOC_Os05g34940.1 169 VHQQ 172 6665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 3.5E-39 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 31.469 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.09E-30 | 2 | 100 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.34E-40 | 2 | 85 | No hit | No description |
PRINTS | PR00404 | 9.6E-28 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.8E-23 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.6E-28 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.6E-28 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 6.0E-16 | 87 | 169 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 12.69 | 89 | 175 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010097 | Biological Process | specification of stamen identity | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009030 | anatomy | carpel | ||||
PO:0007130 | developmental stage | sporophyte reproductive stage | ||||
PO:0007606 | developmental stage | gynoecium development stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 216 aa Download sequence Send to blast |
MGRGKIEIKR IENSTNRQVT FSKRRAGILK KAREIGVLCD AEVGVVIFSS AGKLSDYCTP 60 KTTSVFPPLS RILEKYQTNS GKILWDEKHK SLSAEIDRVK KENDNMQIEL RHMKGEDLNS 120 LQPKELIAIE EALNNGQANL RDKMMDHWRM HKRNEKMLED EHKMLAFRVH QQEVELSGGI 180 RELELGYHHD DRDFAASMPF TFRVQPSHPN LQQEK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6bz1_A | 4e-17 | 1 | 86 | 1 | 86 | MEF2 CHIMERA |
6bz1_B | 4e-17 | 1 | 86 | 1 | 86 | MEF2 CHIMERA |
6bz1_C | 4e-17 | 1 | 86 | 1 | 86 | MEF2 CHIMERA |
6bz1_D | 4e-17 | 1 | 86 | 1 | 86 | MEF2 CHIMERA |
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Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.2214 | 0.0 | panicle |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32985442 | 0.0 | ||||
Expression Atlas | Q40703 | - |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Highly expressed in lodicules, at intermediate levels in stamens, and weakly in carpels. Expressed in pollen. {ECO:0000269|PubMed:10394955, ECO:0000269|PubMed:12905025, ECO:0000269|Ref.1}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the development of floral organs. B-class protein required for normal development of lodicules and stamens (whorls 2 and 3). May function as a heterodimer with MADS16. {ECO:0000269|PubMed:9869408}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os05g34940.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os05g34940 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK100233 | 0.0 | AK100233.1 Oryza sativa Japonica Group cDNA clone:J023051B10, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015640709.1 | 1e-154 | MADS-box transcription factor 4 isoform X2 | ||||
Swissprot | Q40703 | 1e-162 | MADS4_ORYSJ; MADS-box transcription factor 4 | ||||
TrEMBL | B8AYK1 | 1e-152 | B8AYK1_ORYSI; Uncharacterized protein | ||||
TrEMBL | B9FPP6 | 1e-152 | B9FPP6_ORYSJ; Uncharacterized protein | ||||
STRING | OS05T0423400-01 | 1e-160 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3434 | 38 | 77 | Representative plant | OGRP5302 | 12 | 22 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G20240.1 | 8e-72 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os05g34940.1 |