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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
LOC_Os04g57530.1 |
Common Name | LOC9266435, Os04g0670900, OSJNBa0043A12.37, OSNPB_040670900, sh4 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family |
Trihelix |
Protein Properties |
Length: 391aa MW: 41437.2 Da PI: 8.9829 |
Description |
Trihelix family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
LOC_Os04g57530.1 | genome | MSU | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | trihelix | 52.4 | 1.3e-16 | 67 | 152 | 2 | 71 |
trihelix 2 WtkqevlaLiearremeerlrr.gk...............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr 71
Wt +e+l Li+a r +++r g +++++W++v +++++ g+ rs++qC++kw+nl ++ykk+++ e++
LOC_Os04g57530.1 67 WTLHETLILITANRLDDDRRAGvGGaaaggggagspptprSAEQRWKWVENYCWKNGCLRSQNQCNDKWDNLLRDYKKVRDYESRV 152
************9966655553122345666677777777*****************************************99875 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 391 aa
Download sequence Send
to blast |
MSGSSADPSP SASTAGAAVS PLALLRAHGH GHGHLTATPP SGATGPAPPP PSPASGSAPR 60 DYRKGNWTLH ETLILITANR LDDDRRAGVG GAAAGGGGAG SPPTPRSAEQ RWKWVENYCW 120 KNGCLRSQNQ CNDKWDNLLR DYKKVRDYES RVAAAAATGG AAAANSAPLP SYWTMERHER 180 KDCNLPTNLA PEVYDALSEV LSRRAARRGG ATIAPTPPPP PLALPLPPPP PPSPPKPLVA 240 QQQHHHHGHH HHPPPPQPPP SSLQLPPAVV APPPASVSAE EEMSGSSESG EEEEGSGGEP 300 EAKRRRLSRL GSSVVRSATV VARTLVACEE KRERRHRELL QLEERRLRLE EERTEVRRQG 360 FAGLIAAVNS LSSAIHALVS DHRSGDSSGR *
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | DQ383374 | 0.0 | DQ383374.1 Oryza sativa (indica cultivar-group) cultivar CL 16 shattering protein (sh4) mRNA, complete cds. |
GenBank | EF203244 | 0.0 | EF203244.1 Oryza sativa (indica cultivar-group) shattering 1 (SHA1) mRNA, complete cds. |