PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os02g57790.1 | ||||||||
Common Name | LOC107277956, OJ1063_D06.5, OJ1136_C04.13, Os02g0823900, OSNPB_020823900 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | C2H2 | ||||||||
Protein Properties | Length: 328aa MW: 34027.6 Da PI: 8.4912 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.2 | 0.00055 | 117 | 139 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+k+F++ L H +H LOC_Os02g57790.1 117 YECKTCNKCFPTFQALGGHRASH 139 99**********99999998887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.56E-8 | 116 | 139 | No hit | No description |
Pfam | PF13912 | 1.9E-11 | 116 | 141 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.094 | 117 | 139 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.097 | 117 | 144 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 119 | 139 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.56E-8 | 210 | 237 | No hit | No description |
Pfam | PF13912 | 9.1E-13 | 214 | 238 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.349 | 215 | 237 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.026 | 215 | 237 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 217 | 237 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 328 aa Download sequence Send to blast |
MSVEDKHAGV VKRKRTKRPR HHAAPASSSE STTTEEEDMA HCLILLAQGA AVVDSKPSTP 60 APPPPPPAQP PVLAAPAPAP PPPQPPVVVV KSERYTSRKY TEAATTADGV RAGFYVYECK 120 TCNKCFPTFQ ALGGHRASHK KPRLPGADDD NVNNVTNTNA IVVKSKPPLT TTTTPSAPSP 180 PPPQADAVVV PDVTTVLSLN NVAAAGSIIN KLRVHECSIC GAEFGSGQAL GGHMRRHRPL 240 HAPPERAATT AATTAATATA PDTKKEGSTS INLELDLNLP APSDEESVSP PPPPPPPVLL 300 ALGGQFNDGK KPILQLTASA ALVGCHY* |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | Q6K9W9 |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00487 | DAP | Transfer from AT5G04390 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os02g57790.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os02g57790 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP003989 | 0.0 | AP003989.4 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1063_D06. | |||
GenBank | AP004026 | 0.0 | AP004026.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1136_C04. | |||
GenBank | AP014958 | 0.0 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015623775.1 | 0.0 | zinc finger protein ZAT5 | ||||
TrEMBL | Q6K9W9 | 0.0 | Q6K9W9_ORYSJ; Os02g0823900 protein | ||||
STRING | OS02T0823900-00 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2013 | 32 | 85 | Representative plant | OGRP2350 | 10 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04390.1 | 3e-28 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os02g57790.1 |
Entrez Gene | 107277956 |