PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0540s0007.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family HD-ZIP
Protein Properties Length: 813aa    MW: 89505.1 Da    PI: 5.4767
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0540s0007.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox42.89e-14563357
                         --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
             Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                         k  ++t+eq+e+Le+++++ ++ps  +r++L   +    +++ +q k+WFqNrR +ek+
  Kalax.0540s0007.1.p  5 KYVRYTPEQVEALERVYAEFPKPSSLKRRQLIGGCpvlsSIEPKQMKFWFQNRRCREKQ 63
                         5678*****************************************************97 PP
2bZIP_124.56.1e-08571001861
                          HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1  18 rrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61 
                          rr+R++ ++e  +L+ + k+++aeN++L +e+e+l+k+v+ l  
  Kalax.0540s0007.1.p  57 RRCREKQRKESSRLQAENKKFTAENRMLVEENERLQKQVSHLSY 100
                          9**************************************98865 PP
3START137.71.2e-431503572204
                          HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..E CS
                START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..g 89 
                          +aee+ +e+++ka+  + +W +++ +++g++++ +++ s+++ g a+ra+g+   +++  v+e+l+d + W ++++   +l v+ ++  g
  Kalax.0540s0007.1.p 150 IAEETQAEFLSKATGIAVNWIQMVGMKPGPDSVGIVAVSRNCAGVAARACGLMSLEPM-KVAEILKDTPAWFRDCRTHNVLTVLPTAngG 238
                          689999****************************************************.8899999999***************99999* PP

                          EEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SS CS
                START  90 alqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgr 175
                          +l+l++++++a++++++ Rdf+ +R+i   ++g++v++++S++  +  ++   s++++Rae++pSg+li+p+++g+s +++v+h dl+  
  Kalax.0540s0007.1.p 239 TLELIYMQTYAPTTMASaRDFWKLRFISPIEDGGLVVCERSLNASTGGSTgpsSPNFIRAEVFPSGFLIRPCEGGGSIIHIVDHLDLDPC 328
                          ********************************************999988888************************************* PP

                          XXHHHHHHHHHHHHHHHHHHHHHHTXXXX CS
                START 176 lphwllrslvksglaegaktwvatlqrqc 204
                          + +++lr+l++s+ + ++k+ +a+l++ +
  Kalax.0540s0007.1.p 329 SAPEILRPLYESSEIIAQKISFAALRHIR 357
                          ************************99865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007113.588164IPR001356Homeobox domain
SMARTSM003897.8E-8268IPR001356Homeobox domain
CDDcd000861.81E-10565No hitNo description
SuperFamilySSF466898.55E-13566IPR009057Homeodomain-like
PfamPF000462.6E-11663IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.6E-13760IPR009057Homeodomain-like
CDDcd146863.45E-75796No hitNo description
Gene3DG3DSA:1.20.5.1706.2E-46198No hitNo description
PROSITE profilePS5084822.472140359IPR002913START domain
SMARTSM002346.9E-32149359IPR002913START domain
SuperFamilySSF559612.33E-26150361No hitNo description
PfamPF018521.4E-41150357IPR002913START domain
Gene3DG3DSA:3.30.530.201.8E-16188325IPR023393START-like domain
PfamPF086703.7E-30683811IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 813 aa     Download sequence    Send to blast
MDSGKYVRYT PEQVEALERV YAEFPKPSSL KRRQLIGGCP VLSSIEPKQM KFWFQNRRCR  60
EKQRKESSRL QAENKKFTAE NRMLVEENER LQKQVSHLSY DNGFMRQKLR SRSATTDASC  120
ESVVTPHSQQ NPTQQRRERD ADSPAGLLAI AEETQAEFLS KATGIAVNWI QMVGMKPGPD  180
SVGIVAVSRN CAGVAARACG LMSLEPMKVA EILKDTPAWF RDCRTHNVLT VLPTANGGTL  240
ELIYMQTYAP TTMASARDFW KLRFISPIED GGLVVCERSL NASTGGSTGP SSPNFIRAEV  300
FPSGFLIRPC EGGGSIIHIV DHLDLDPCSA PEILRPLYES SEIIAQKISF AALRHIRQIA  360
QENCGEIKYG GGKQPAVLRT FSQRLSRGFN DAVNGLVDDG WSLLDSVEMD DVTISINMSA  420
SKFIDSQSNS AALFPAFGGG VLCAKASMLL EDVAPVHLVC FIREHRSEWA DYGIDAYWAA  480
SVRASPSAIP CSTPSTLRSN QVILPLAHTI ELEEFLEVVR LEGQAFCLED NAFARDMFLL  540
HGIDENEVGP CAQIVFAPID ESFADDALLL PSGFRIISLE NKADEPGATR TLDLASVLEV  600
HTTGAQAAGD SGANHFKQRA VLTMAFQFTF ENHLRDIVAS MARQYVRSVV GAVQRVAVAL  660
SPARLGSQMV VENSFPGSTE VITLARWITQ SYKIHIGEEL VRVCSQAGDS VLKLLWQFSE  720
AVMCFGLDML ETTFGSLQDI KLEKTLDEAG RKSLLAEFPK ITQQGFAYLP AGNCMSSMGR  780
PISYDQAIAW IVLDGEEVNH CLAFMFVNWS FM*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002281868.20.0PREDICTED: homeobox-leucine zipper protein HOX32
SwissprotQ6AST10.0HOX32_ORYSJ; Homeobox-leucine zipper protein HOX32
TrEMBLA0A2N9J8X20.0A0A2N9J8X2_FAGSY; Uncharacterized protein
STRINGVIT_10s0003g04670.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Itoh J,Hibara K,Sato Y,Nagato Y
    Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice.
    Plant Physiol., 2008. 147(4): p. 1960-75
    [PMID:18567825]
  3. Li YY, et al.
    Overexpression of OsHox32 Results in Pleiotropic Effects on Plant Type Architecture and Leaf Development in Rice.
    Rice (N Y), 2016. 9(1): p. 46
    [PMID:27624698]