PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Kalax.0296s0015.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 220aa MW: 24570.4 Da PI: 9.2064 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 64.8 | 1.2e-20 | 26 | 80 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +k+ +f++eq++ Le +F ++++p+ ++++LA++lgL+ rqV +WFqNrRa+ k Kalax.0296s0015.1.p 26 KKKKRFSDEQIRSLEVMFGSESKPDPGSKQQLAAELGLQPRQVAIWFQNRRARLK 80 67889************************************************98 PP | |||||||
2 | HD-ZIP_I/II | 118.1 | 4.8e-38 | 26 | 118 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 +kk+r+s+eq+++LE +F +e+k +p K++la eLglqprqva+WFqnrRAR k kq+E++y++Lk+ ydal+ + e+L+ke+++L+++ Kalax.0296s0015.1.p 26 KKKKRFSDEQIRSLEVMFGSESKPDPGSKQQLAAELGLQPRQVAIWFQNRRARLKPKQIEREYDSLKAGYDALACKFESLKKENQSLTAQ 115 59***************************************************************************************9 PP HD-ZIP_I/II 91 lke 93 l++ Kalax.0296s0015.1.p 116 LRT 118 986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 5.43E-19 | 11 | 83 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.912 | 22 | 82 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.8E-19 | 24 | 86 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 4.7E-18 | 26 | 80 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 4.3E-20 | 27 | 89 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 4.97E-14 | 30 | 83 | No hit | No description |
PRINTS | PR00031 | 2.7E-6 | 53 | 62 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 57 | 80 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 2.7E-6 | 62 | 78 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 1.3E-16 | 82 | 122 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 220 aa Download sequence Send to blast |
MTFHEASVCR SARNNNSGGG GNKMMKKKKR FSDEQIRSLE VMFGSESKPD PGSKQQLAAE 60 LGLQPRQVAI WFQNRRARLK PKQIEREYDS LKAGYDALAC KFESLKKENQ SLTAQLRTLT 120 EKFERVRMDR NGRMGEQTTA SDSAEQAKHR VGDDQRQGGS GEEKLRVVEQ LGGGGGGSIP 180 LEMMYSSPFA SSANSWSSEY SCFLDQSTSC GSSQWWEFW* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 74 | 82 | RRARLKPKQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A1R3K6Y4 | 1e-43 | A0A1R3K6Y4_9ROSI; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G61890.1 | 5e-35 | homeobox 12 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Kalax.0296s0015.1.p |