PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0016s0052.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 833aa MW: 91207.2 Da PI: 6.3148 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.2 | 1.3e-18 | 5 | 63 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+e+Le++++++++ps +r++L +++ +++ +q+kvWFqNrR +ek+ Kalax.0016s0052.1.p 5 KYVRYTPEQVEALERVYAECPKPSSLKRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 63 5678*****************************************************97 PP | |||||||
2 | START | 155.3 | 4.9e-49 | 153 | 360 | 2 | 204 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..E CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..g 89 +aee+++e+++ka+ ++ +Wv++ +++g++++ +++ s++++g a+ra+g+v +++ v+e+l+d + W ++++ ++l + ++ g Kalax.0016s0052.1.p 153 IAEETLAEFLSKATGTAVNWVQMIGMKPGPDSIGIVAVSRNCKGVAARACGLVSLEPM-KVAEILKDTPSWFRDCRTHDVLSILPTAngG 241 68999*****************************************************.8899999999***************99999* PP EEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SS CS START 90 alqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgr 175 +l+l++++++a++++++ Rdf+ +R+i +l++g++v++++S++ + p+ s ++vRae++pSg+li+p+++g+s +++v+h dl+ Kalax.0016s0052.1.p 242 TLELIYMQTYAPTTMSSgRDFWKLRFISSLEDGSLVVCERSLNASTGGPTgpsSLNFVRAEVFPSGYLIRPCEGGGSIIHIVDHLDLDPC 331 **********************************************999999999*********************************** PP XXHHHHHHHHHHHHHHHHHHHHHHTXXXX CS START 176 lphwllrslvksglaegaktwvatlqrqc 204 + +++lr+l++s+ + ++k++va+lq+ + Kalax.0016s0052.1.p 332 SAPEILRPLYESSKIIAQKITVAALQHIR 360 **************************866 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 15.532 | 1 | 64 | IPR001356 | Homeobox domain |
SMART | SM00389 | 8.6E-16 | 2 | 68 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.89E-16 | 5 | 65 | No hit | No description |
SuperFamily | SSF46689 | 1.97E-16 | 5 | 66 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 3.6E-16 | 6 | 63 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 3.1E-18 | 7 | 63 | IPR009057 | Homeodomain-like |
CDD | cd14686 | 2.94E-6 | 57 | 96 | No hit | No description |
PROSITE profile | PS50848 | 23.795 | 143 | 344 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 1.7E-16 | 151 | 329 | IPR023393 | START-like domain |
SMART | SM00234 | 6.6E-40 | 152 | 362 | IPR002913 | START domain |
Pfam | PF01852 | 8.5E-47 | 153 | 360 | IPR002913 | START domain |
SuperFamily | SSF55961 | 5.36E-31 | 153 | 364 | No hit | No description |
Pfam | PF08670 | 3.8E-45 | 687 | 831 | IPR013978 | MEKHLA |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 833 aa Download sequence Send to blast |
MDSGKYVRYT PEQVEALERV YAECPKPSSL KRQQLIRECP ILSNIEPKQI KVWFQNRRCR 60 EKQRKESSRL QTVNKKLTAL NRLLMEENER LQKQVSHLSY DNGFMRQKLR SVSATTNASC 120 ESVVMSGPPH SQQNPTHQHP ERDANSPAGL LAIAEETLAE FLSKATGTAV NWVQMIGMKP 180 GPDSIGIVAV SRNCKGVAAR ACGLVSLEPM KVAEILKDTP SWFRDCRTHD VLSILPTANG 240 GTLELIYMQT YAPTTMSSGR DFWKLRFISS LEDGSLVVCE RSLNASTGGP TGPSSLNFVR 300 AEVFPSGYLI RPCEGGGSII HIVDHLDLDP CSAPEILRPL YESSKIIAQK ITVAALQHIR 360 QIAQENCGEI KYGGKQPAVL RTFSQRLSRG FNDAVNGFAD DGWSLLDSVG MDDVTISINM 420 SASKFLGSQS NSAALFPAFG GGVLCAKASM LLEDVPPAVL VRFLREHRSE WADYGIDAYS 480 ATALRASPFA IPCSKLNTLP SNQVILPLAH TIELEEFLEV VRLEGQAFCP EDIAFARDMF 540 LLQLCSGIDE NEAGPCAQIV FAPIDESFAD DALLLPSGFR VISLENKADE PGATRTLDLA 600 SALEVHTTGA QAAGGSGANH FKHRAVLTMA FQFTFENHLR DSVASMARQY VRSVVGAVQR 660 VAMALSPARL GSQMVVKSFP GSTEAITLAR WIAQSYKIHT GEELVRVYSQ AGDSVLKLLW 720 QISDAVMCCS LTTNASPVFT FANQSGLDML ETTFGSLQDI KLEKTLNEAG HKSLLAEFPK 780 ITQQGFAYLP AGNCMSSMGR PISYDQAIAW KVQDDEEVNQ CLAFMFVNWS FM* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002281868.2 | 0.0 | PREDICTED: homeobox-leucine zipper protein HOX32 | ||||
Swissprot | Q6AST1 | 0.0 | HOX32_ORYSJ; Homeobox-leucine zipper protein HOX32 | ||||
TrEMBL | A0A2N9J8X2 | 0.0 | A0A2N9J8X2_FAGSY; Uncharacterized protein | ||||
STRING | VIT_10s0003g04670.t01 | 0.0 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34710.1 | 0.0 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0016s0052.1.p |
Publications ? help Back to Top | |||
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