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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0085s0023.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | SBP | ||||||||
Protein Properties | Length: 847aa MW: 92398.6 Da PI: 5.1082 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 131.8 | 2.3e-41 | 145 | 221 | 1 | 77 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +Cqve+C adls+ak+yhrrhkvCe+hska+ +lv ++qrfCqqCsrfh+l efDe+krsCrrrLa+hn+rrrk++ Kaladp0085s0023.2.p 145 VCQVEDCGADLSKAKDYHRRHKVCEMHSKASRALVGTVMQRFCQQCSRFHALPEFDEGKRSCRRRLAGHNKRRRKAN 221 6**************************************************************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 6.1E-33 | 138 | 207 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.026 | 143 | 220 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.44E-37 | 144 | 222 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 1.1E-29 | 146 | 219 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 847 aa Download sequence Send to blast |
MEANVGDQIR HFYGLGSSSL NPVGKRSLEW DLNDWKWDGH LFVASPLNCK PSGYSSHQLL 60 PETGGSSNNS STCSDDATIG NDTREQELLR SRRAAGGEVG DAGNLSLMLG GNGVPASEMQ 120 LTSWEGANGK KSKVVVGGSS SNRAVCQVED CGADLSKAKD YHRRHKVCEM HSKASRALVG 180 TVMQRFCQQC SRFHALPEFD EGKRSCRRRL AGHNKRRRKA NPLNVAPGTS LNDDQSNNYL 240 LLTLLKILAD LHSNRSDGAK NQDMLSHLLR SLEENTVANG GKNITEAVCA MLSNGRQALA 300 SSGGQHTLAM QEMPQNGSPS ADVSPPPSTV ISIKDSPPGY SVAPSTAAGP VKLNTFDLND 360 VYVDSADGID DLEGFRVPAN NGNSSIGCPS WMQQDVHSSS PPQVSRNSDS GSAQSPSSSS 420 GGDQIRTDRI VFKLFGKEPC DFPLALRTQI LDWLAHTPTD IESYIRPGCI VLSIYLRLAE 480 SVWDELCLDL SSSLSRLIDV SEDSFWSTGW VYVRVQDQVA FICNGQVVLD TTLPYISSAS 540 RILSVRPIAV PMSEKASFSI KGCNIFPPNS RLLCALEGQY LAHENIPESL EESSSNHNDS 600 DKLQVINYSC SIPAIIGRGF VEVEEDNGLG RDFFPFIVAE SDICSEICML ESTLEQTETD 660 ETSENGEPDA RSNAIDFIQE MGWLLRRSQL RLRFGYSNKR AEDLFHFDRF KWLMEFSLDR 720 DWCAVVKKLL DILCDGEVGS GEHDSLVAAV SDMGILHRAV RRNSRPLVEL LLRYVPEQTS 780 NNSMMKGGEL LFMPNEMGPA GLTPLHIAAG RDGAEAVLDA LTDDPNKVTC LSTHCVGTCF 840 RLSMPS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 3e-30 | 138 | 219 | 4 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000269|PubMed:16554053}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00633 | PBM | Transfer from PK06791.1 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010652308.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 1 | ||||
Swissprot | Q9S7P5 | 0.0 | SPL12_ARATH; Squamosa promoter-binding-like protein 12 | ||||
TrEMBL | A0A438IXL5 | 0.0 | A0A438IXL5_VITVI; Squamosa promoter-binding-like protein 12 | ||||
STRING | VIT_07s0005g02260.t01 | 0.0 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G60030.1 | 0.0 | squamosa promoter-binding protein-like 12 |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0085s0023.2.p |
Publications ? help Back to Top | |||
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