PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0069s0016.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB_related
Protein Properties Length: 1099aa    MW: 122404 Da    PI: 8.698
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0069s0016.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.21.6e-074580340
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS
      Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40
                          W+  E +++++a +++G++ Wk++a+ +   R+ +++
  Kaladp0069s0016.1.p 45 QWSNKELQQFYEAYRKYGTN-WKKVAAAVR-SRSVEMV 80
                         6*****************99.********9.9998765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.00364290IPR001005SANT/Myb domain
SuperFamilySSF466893.51E-94489IPR009057Homeodomain-like
PfamPF002491.2E-64580IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-44579IPR009057Homeodomain-like
CDDcd001672.41E-54680No hitNo description
SMARTSM011356.9E-59588689IPR033471DIRP domain
PfamPF065841.9E-32588688IPR033471DIRP domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0016592Cellular Componentmediator complex
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1099 aa     Download sequence    Send to blast
MAPSRKTGNA NKQSPTANKI VAKKDEEDAK TKQKKRKLGD MLGSQWSNKE LQQFYEAYRK  60
YGTNWKKVAA AVRSRSVEMV EALYSMNRAY LSLPEGTASV AGLIAMVTDH YCVMERSDSE  120
QESNEGRDQE APQKAQKRSR RKFRNSKFKD MDHNLPDHSP SRFVGSTSDC LSLLKANLPG  180
SEPRVVGKRT PRVPVVHTSD KDFWDKNFSA SPGRKFKMNA DDHVAHEIAL ALTKASQKDK  240
SPRISQSNRA SKRKIGNVSS PAKSDDRMHF IEETSAQLQG SARDEIDHQG SMGSIDVDNL  300
RSGSTLRDRE GFGTLDIQKK GLRSNGKKFI AETGNDHLDD MKEACSGTEE QNSSAFSKNR  360
GFENPKQLIS KGQKQRNKKI LFDEDESAAF EALNTLADLS LTMPEPFLDN DNRGADINTS  420
SAKSKGNNSF GGDEDTTIKF ISSDRGGNVG TIPDSEDKTG IRKRKPKSLP FCMENLKMEP  480
HLYHTGNFPN SEDVEHANKS LSKGHHKEGE HVNASTLNVS RESEGDFSSK NRNWRKRDLP  540
KSVNLKDTNY SVQVESGRPT DGILNLKAKL ANCLSWRKAR RWCTFEWFYS AIDYPWFARR  600
EFVEYLDHVG LGHIPRLTRV EWGVIRSSLG KPRRFSQQFL KEEKEKLNQY RESVRNHYTE  660
LRLGAREGLP TDLARPLSVG QRVIAIHPKT REVHDGSVLT VDRSRCHVQF DKPDLGVEFV  720
MDIDCMPLNP LENMPASLAI NKLSENHNGV KLNGLTSHHS ASLHPNGNID KPDDPLLRPW  780
SDSLVDNSKK TVKDNIPSSN VQAKARSSGP ISGQEAADQP SFLAQSKEAD VKALYEMTCA  840
LDKKEAIVSE FKRMNDEVEE NKRLDSLFEV PESFSKRYAS VLVQLDEVND QVTLALRCLR  900
QRNTYQGSFG LISAKPALVD IGVVTGTLNY STSDTSKQET HVPEIVEGSR SKAQKMVDAA  960
MKAMSSLKSS VHGGVEEAID YLNTQLSQEE PDVSAVRSVP VSATPGKHLA IISADPKMNT  1020
TPDSNAQIPS ELITNCVATL FMIQKCTERE FPPADVAQIL DSAVTSLQPC CSQNLPIYAD  1080
IQKCMGIIRS QILALIRI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023908919.10.0protein ALWAYS EARLY 3 isoform X1
RefseqXP_023908920.10.0protein ALWAYS EARLY 3 isoform X1
RefseqXP_023908921.10.0protein ALWAYS EARLY 3 isoform X1
RefseqXP_023908922.10.0protein ALWAYS EARLY 3 isoform X1
TrEMBLA0A2I4F3380.0A0A2I4F338_JUGRE; protein ALWAYS EARLY 3 isoform X1
STRINGcassava4.1_000519m0.0(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21430.20.0DNA binding