PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0058s0300.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | TCP | ||||||||
Protein Properties | Length: 281aa MW: 30388.9 Da PI: 8.5314 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 108.5 | 9.7e-34 | 58 | 259 | 2 | 98 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.......................... 65 a+kk +++++h kv+gR+RR+R++a+caar+F+L++eLG+++d++ti+WLlqqa+p+i+++t Kaladp0058s0300.3.p 58 APKKGPTKDRHIKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATAGlhqkldeyggsslnrsnwtmvsgghh 147 789***********************************************************9988888887777666666666666665 PP TCP 66 ..........................ssssaseceaesssssasnsssg......................................... 88 + + Kaladp0058s0300.3.p 148 lgasnlwphqaqvsglgfqipppppaN---------------------Tgpagganlagsegsnylqkigfsgfempqgnighmsftsfl 216 555555555555555555444333331.....................022222222222222234444444555555555555555555 PP TCP 89 .................................kaaksaaksk 98 + + +++++ Kaladp0058s0300.3.p 217 snqqmpglelglsqdghigvlnpqalnqiyhqmGHGRMHHQQQ 259 5555566666666666666777777766665553333333333 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 3.7E-29 | 64 | 251 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 27.296 | 64 | 118 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008361 | Biological Process | regulation of cell size | ||||
GO:1900056 | Biological Process | negative regulation of leaf senescence | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000987 | Molecular Function | core promoter proximal region sequence-specific DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 281 aa Download sequence Send to blast |
MDPKKQPAAA AAMAETNHIN SSNNTSKMMI QQGGEGKEQQ LQIGISEKSD SSKKQLLAPK 60 KGPTKDRHIK VEGRGRRIRM PALCAARIFQ LTRELGHKSD GETIQWLLQQ AEPSIIAATA 120 GLHQKLDEYG GSSLNRSNWT MVSGGHHLGA SNLWPHQAQV SGLGFQIPPP PPANTGPAGG 180 ANLAGSEGSN YLQKIGFSGF EMPQGNIGHM SFTSFLSNQQ MPGLELGLSQ DGHIGVLNPQ 240 ALNQIYHQMG HGRMHHQQQQ QQQQHQEHSP AKDDSQDSEQ * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the site II motif (3'-TGGGCC/T-5') in the promoter of PCNA-2 and to 3'-GCCCG/A-5' elements in the promoters of cyclin CYCB1-1 and ribosomal protein genes. {ECO:0000269|PubMed:12631321, ECO:0000269|PubMed:16123132}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00384 | DAP | Transfer from AT3G27010 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015037 | 1e-32 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021663706.1 | 1e-87 | transcription factor TCP20-like | ||||
Swissprot | Q9LSD5 | 7e-58 | TCP20_ARATH; Transcription factor TCP20 | ||||
TrEMBL | A0A067L058 | 2e-85 | A0A067L058_JATCU; Uncharacterized protein | ||||
STRING | cassava4.1_012485m | 3e-85 | (Manihot esculenta) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27010.1 | 1e-56 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0058s0300.3.p |