PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0058s0300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | TCP | ||||||||
Protein Properties | Length: 306aa MW: 32721.5 Da PI: 9.048 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 122.8 | 3.8e-38 | 58 | 140 | 2 | 84 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasn 84 a+kk +++++h kv+gR+RR+R++a+caar+F+L++eLG+++d++ti+WLlqqa+p+i+++tgt++ +as+ ++sss+s+++ Kaladp0058s0300.1.p 58 APKKGPTKDRHIKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGTGTVPASALITSSSSNSQKA 140 789*************************************************************9999988844444444442 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 2.1E-30 | 64 | 264 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 27.296 | 64 | 118 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008361 | Biological Process | regulation of cell size | ||||
GO:1900056 | Biological Process | negative regulation of leaf senescence | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000987 | Molecular Function | core promoter proximal region sequence-specific DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 306 aa Download sequence Send to blast |
MDPKKQPAAA AAMAETNHIN SSNNTSKMMI QQGGEGKEQQ LQIGISEKSD SSKKQLLAPK 60 KGPTKDRHIK VEGRGRRIRM PALCAARIFQ LTRELGHKSD GETIQWLLQQ AEPSIIAATG 120 TGTVPASALI TSSSSNSQKA VSLSAGLHQK LDEYGGSSLN RSNWTMVSGG HHLGASNLWP 180 HQAQVSGLGF QIPPPPPANT GPAGGANLAG SEGSNYLQKI GFSGFEMPQG NIGHMSFTSF 240 LSNQQMPGLE LGLSQDGHIG VLNPQALNQI YHQMGHGRMH HQQQQQQQQH QEHSPAKDDS 300 QDSEQ* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the site II motif (3'-TGGGCC/T-5') in the promoter of PCNA-2 and to 3'-GCCCG/A-5' elements in the promoters of cyclin CYCB1-1 and ribosomal protein genes. {ECO:0000269|PubMed:12631321, ECO:0000269|PubMed:16123132}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00384 | DAP | Transfer from AT3G27010 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015037 | 2e-32 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012067277.1 | 1e-101 | transcription factor TCP20 | ||||
Refseq | XP_021628530.1 | 1e-101 | transcription factor TCP20-like | ||||
Swissprot | Q9LSD5 | 8e-66 | TCP20_ARATH; Transcription factor TCP20 | ||||
TrEMBL | A0A067L058 | 1e-100 | A0A067L058_JATCU; Uncharacterized protein | ||||
TrEMBL | A0A2C9V0Q5 | 1e-100 | A0A2C9V0Q5_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_012485m | 1e-100 | (Manihot esculenta) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27010.1 | 1e-63 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0058s0300.1.p |