PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0048s0835.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family TCP
Protein Properties Length: 406aa    MW: 45942.3 Da    PI: 6.8398
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0048s0835.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP135.25.8e-421543084133
                  TCP   4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...........ssssaseceaesssssa 82 
                          kkdrhski T++g+RdRR+Rls+++a rfF Lqd+LGfdk+skt+eWLl +++ +i + +++           s+ +++ ce++s++ ++
  Kaladp0048s0835.1.p 154 KKDRHSKINTAQGPRDRRMRLSLDIAQRFFGLQDMLGFDKASKTVEWLLSKSQSEINKVVRSkksdannvksdSFGASEYCEEVSEVDNK 243
                          9*************************************************************6666665555544444555666666666 PP

                  TCP  83 snsssg..............kaaksaakskksqksaasalnlakesrakarararertrekmrik 133
                          +  s++              k+ k++ k + s++++  ++++ kesr+karararert+ekm+i 
  Kaladp0048s0835.1.p 244 DDLSQSgamdinkenkksssKQGKNNGKVSVSSRKDGFNHHVTKESREKARARARERTKEKMMIC 308
                          63333345566666666554555555577777777777899999******************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136933.041154212IPR017887Transcription factor TCP subgroup
PfamPF036347.5E-44154306IPR005333Transcription factor, TCP
PROSITE profilePS5137012.397287304IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048831Biological Processregulation of shoot system development
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MFPAPDGNNS SSSNSFIVPY PDQPFLYSKL FDDIHIDTEY RNPYSPFSFL DQFHAHSPFF  60
NSSDHHEQQP LEIQDSPFVQ HHEEQQPVET TYYQEFTMAA TSNNSASTGG YCTTENFHGN  120
GFPGEPTSGN SSTSASVGPV KQHDAVRKNG ILLKKDRHSK INTAQGPRDR RMRLSLDIAQ  180
RFFGLQDMLG FDKASKTVEW LLSKSQSEIN KVVRSKKSDA NNVKSDSFGA SEYCEEVSEV  240
DNKDDLSQSG AMDINKENKK SSSKQGKNNG KVSVSSRKDG FNHHVTKESR EKARARARER  300
TKEKMMICNP QSQTKQQNNN VHNFSNMDQN MLTQVKKQDL LNPEQHTYSY VDQGHMMTDQ  360
DESLANMYTT YWNPSSATVF NHLQQQNNGT SQQLQVGDIQ FYARP*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00215DAPTransfer from AT1G67260Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.13e-25TCP domain protein 12