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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0039s0305.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | CAMTA | ||||||||
Protein Properties | Length: 919aa MW: 103798 Da PI: 6.8932 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 159 | 9.5e-50 | 26 | 143 | 2 | 118 |
CG-1 2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahsee 90 l+e k+rwl+++ei+a+L n++ +++++++ + pksg+++Ly+rk++r+fr+DG++wkkk dgkt++E+he+LKvg+ e +++yYah+++ Kaladp0039s0305.1.p 26 LEEaKSRWLRPNEIHALLCNYKYFNIHAKPLNLPKSGTVVLYDRKMLRNFRRDGHNWKKKNDGKTIKEAHEHLKVGNEERIHVYYAHGHD 115 55669************************************************************************************* PP CG-1 91 nptfqrrcywlLeeelekivlvhylevk 118 n tf rrcywlL+++le+ivlvhy+e++ Kaladp0039s0305.1.p 116 NLTFVRRCYWLLDKSLEHIVLVHYRETQ 143 *************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51437 | 72.924 | 22 | 148 | IPR005559 | CG-1 DNA-binding domain |
SMART | SM01076 | 3.0E-69 | 25 | 143 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 4.9E-44 | 28 | 141 | IPR005559 | CG-1 DNA-binding domain |
SuperFamily | SSF81296 | 2.29E-14 | 369 | 456 | IPR014756 | Immunoglobulin E-set |
SuperFamily | SSF48403 | 4.04E-16 | 550 | 672 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 1.29E-14 | 554 | 664 | No hit | No description |
Gene3D | G3DSA:1.25.40.20 | 7.9E-16 | 559 | 669 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50297 | 16.706 | 563 | 676 | IPR020683 | Ankyrin repeat-containing domain |
Pfam | PF12796 | 2.8E-6 | 579 | 668 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50088 | 11.247 | 605 | 637 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 3.3E-5 | 605 | 634 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 370 | 644 | 675 | IPR002110 | Ankyrin repeat |
SuperFamily | SSF52540 | 3.19E-6 | 766 | 840 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
SMART | SM00015 | 50 | 768 | 790 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 5.3E-4 | 791 | 813 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 10.676 | 792 | 816 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 8.1E-5 | 794 | 813 | IPR000048 | IQ motif, EF-hand binding site |
SuperFamily | SSF52540 | 3.19E-6 | 871 | 899 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
SMART | SM00015 | 6.7 | 871 | 893 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 0.12 | 873 | 893 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 7.895 | 873 | 901 | IPR000048 | IQ motif, EF-hand binding site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 919 aa Download sequence Send to blast |
MDAVLLAGSE IHGFHTMADL DVANMLEEAK SRWLRPNEIH ALLCNYKYFN IHAKPLNLPK 60 SGTVVLYDRK MLRNFRRDGH NWKKKNDGKT IKEAHEHLKV GNEERIHVYY AHGHDNLTFV 120 RRCYWLLDKS LEHIVLVHYR ETQELQGAPD TPVNSNSSSG NSDISVHQLL SDGTDSGHVE 180 SHYTGQNLYS ELGEIITEHI HEKTLHEINT LEWDELLVTN DPANIIAPKE GTQTSSHSIT 240 SDDNQEGFLL LNNISSEINP YLGYGSHNPG RSGANVKVLD EASFLSISGQ LNTHLSGKNY 300 VPVNSSSLIP KESLQNQDSF GRWMNDIIVD SPRSDENSML EQSLCPSQAP SGSFALRQSQ 360 SSFPDQIFTI TDISPGWAFS TENTKILLTG FFHKEYAHLA ISDITCVCGD ASVSVEVLQV 420 GVFRCFISPH KPGFVNIYLS LDGSKPISQV LTFEYRSSLS PTTLVSSEDT NKWMELRMKT 480 RLTHLLYLKS KSLDILSSKL SQNSVKEAKK FALKTSHIAN RWAYLIESLE DQKISFHEAQ 540 DDLLELSLRN RLREWLLESI IQGSKIAYLD DEGLGVIHMC AILEYTWAVY LYSKSGLSLD 600 FRDKNGWTAL HWAAFYGREK MTAALLSAGA KPNLVTDPTP EHPGGCTAAD LASKQGYEGV 660 AAYLAEKGLV EHFNDMSIAG NVSGSLQTYT PDPTEISTLN EEEQYLKESL AAYRTAADAA 720 ARIQTAMREH ALKVKAKAVE VATPEAEARA IVAAMKIQHA FRNFETRKKI VAAGRIQQRF 780 RTWKIRKDFL QKRHKAIKIQ AVFRGYQVRR QYRKILWSVG VLEKAILRWR LKRKGFRGLQ 840 LDPDEALTKD GQEPNGEEDF FEAGRKQAEE RVERSVIKVQ AMFRSKQAQQ EYQRMKLAHT 900 QAKLEYEEFV EPEMDTDS* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:14581622, ECO:0000269|PubMed:28351986, ECO:0000305|PubMed:11925432}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00435 | DAP | Transfer from AT4G16150 | Download |
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Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269|PubMed:12218065}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028075463.1 | 0.0 | calmodulin-binding transcription activator 5-like isoform X2 | ||||
Swissprot | O23463 | 0.0 | CMTA5_ARATH; Calmodulin-binding transcription activator 5 | ||||
TrEMBL | D7SY49 | 0.0 | D7SY49_VITVI; Uncharacterized protein | ||||
STRING | VIT_05s0077g01240.t01 | 0.0 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G16150.1 | 0.0 | calmodulin binding;transcription regulators |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0039s0305.1.p |
Publications ? help Back to Top | |||
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