PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0031s0169.2.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family B3
Protein Properties Length: 280aa    MW: 31351.7 Da    PI: 7.9374
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0031s0169.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.91.3e-16797197
                         EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                   B3  1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92
                         ffk+  p d+++  ++ +p +f+ + + + ++ ++  l  + g++W+v +   ++++ +++t+GWk Fvk+ng+  g f++F++ g ++f  
  Kaladp0031s0169.2.p  7 FFKIYFPDDSSE--IMKMPEEFVGHLKADYKGCRQAYLVGPGGEEWRVGF--ARCGNDCFFTDGWKTFVKDNGVAYGHFLLFRYRGGMRF-- 92
                         677776655554..589******666666668889***************..********************************998999.. PP

                         EEEEE CS
                   B3 93 vvkvf 97
                         +v +f
  Kaladp0031s0169.2.p 93 KVNIF 97
                         88777 PP
2B349.11e-151952761698
                          EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                   B3  16 lvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                          l + k+f++e+  + k++++ l+l++++g  W++++  + +   ++l +GW +F ++n+++ gD++vF+  ++s+ el+v+vf 
  Kaladp0031s0169.2.p 195 LHILKSFFSENsVICKPSDRHLVLRTRHGGCWSLTI--NHGTYVHTLCDGWASFLRDNNVENGDVCVFEIADSSKLELLVHVFH 276
                          58999******9555678889***************..88888899***********************8877*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.69E-205100IPR015300DNA-binding pseudobarrel domain
CDDcd100175.48E-16597No hitNo description
PROSITE profilePS5086313.0145100IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.0E-205100IPR015300DNA-binding pseudobarrel domain
PfamPF023627.9E-14797IPR003340B3 DNA binding domain
SMARTSM010193.5E-127100IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.5E-14175275IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.0E-13180276IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.646180278IPR003340B3 DNA binding domain
SMARTSM010199.0E-5187278IPR003340B3 DNA binding domain
PfamPF023621.3E-12195276IPR003340B3 DNA binding domain
CDDcd100171.34E-7195275No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MDLLPVFFKI YFPDDSSEIM KMPEEFVGHL KADYKGCRQA YLVGPGGEEW RVGFARCGND  60
CFFTDGWKTF VKDNGVAYGH FLLFRYRGGM RFKVNIFTPS GLESEAAFTA KCTQGWKNNG  120
AEKGQSSNNG GQVLPACCLV KPSADEGTSR RPGKRPKGES HMMSAAEQRV ADVFSSVHPF  180
IIRQMNFERS QMPVLHILKS FFSENSVICK PSDRHLVLRT RHGGCWSLTI NHGTYVHTLC  240
DGWASFLRDN NVENGDVCVF EIADSSKLEL LVHVFHSPF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.19e-14B3 family protein