PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0026s0080.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family TCP
Protein Properties Length: 374aa    MW: 41026.4 Da    PI: 10.1539
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0026s0080.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP1181.2e-361152593135
                  TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa........sec....eaessss 80 
                          +k d  ski T++g+RdRRvRls+ +a++fFdLqd LGfdk+s t+eWLl+++ +ai el   ssss           +    +  sss 
  Kaladp0026s0080.1.p 115 KKSDNRSKIRTAKGLRDRRVRLSIGIARKFFDLQDLLGFDKPSRTLEWLLKNSSKAILELSAASSSSTppqgkaaaG-VvdgfKGLSSSR 203
                          68999*******************************************************99944444333433331.133333333333 PP

                  TCP  81 sasnsssgkaaksaa.kskksqksaasalnlakesrakarararertrekmriknk 135
                          s+ + s ++a+  +  +  k+ k++a+al lakesr+kararar rt+ k ++  k
  Kaladp0026s0080.1.p 204 STTAYSTNQAELLSCdTALKTMKRKAAALLLAKESREKARARARARTAAKLHTAGK 259
                          3333333333333333556666677777*********************9987755 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.4E-32116253IPR005333Transcription factor, TCP
PROSITE profilePS5136929.185116174IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137010.291236253IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MGLAACSFDT SLLEKKVRVL VLYCHSITQP PGYTRTTMLS SSLLDIVAGS SNTLHHHHQH  60
LQESLYSHIF SDHNAGYNLH HPNPVAKDLQ DDHVPLNSGR VTIITPEPAV ALSKKKSDNR  120
SKIRTAKGLR DRRVRLSIGI ARKFFDLQDL LGFDKPSRTL EWLLKNSSKA ILELSAASSS  180
STPPQGKAAA GVVDGFKGLS SSRSTTAYST NQAELLSCDT ALKTMKRKAA ALLLAKESRE  240
KARARARART AAKLHTAGKS LDHQKSRLLN NHTPYWSADR HYFSSSSLIK LLDNEIQKEE  300
IKAAGGGEQH KQKLQIQLYN YNYGIGSNFE SALNPSLSLD WDISSVLPPP SSSAAPKSNF  360
SGDIDIYSRA NWD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A2e-14121174154Putative transcription factor PCF6
5zkt_B2e-14121174154Putative transcription factor PCF6
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67260.11e-20TCP family protein