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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0018s0264.4.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | CAMTA | ||||||||
Protein Properties | Length: 912aa MW: 103244 Da PI: 6.5981 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 158 | 1.8e-49 | 16 | 130 | 4 | 117 |
CG-1 4 e.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenp 92 e k+rwl+++ei+aiL n+ + ++ ++ + pksg++ L++rkk+r+frkDG++wkkk dgktv+E+he+LKvg+ e +++yYah+++n+ Kaladp0018s0264.4.p 16 EaKSRWLRPNEIHAILFNHMYFPIHVKPVNLPKSGEIHLFDRKKLRNFRKDGHNWKKKNDGKTVKEAHEHLKVGNEERIHVYYAHGQDNA 105 559*************************************************************************************** PP CG-1 93 tfqrrcywlLeeelekivlvhylev 117 tf rrcywlL++++e+ivlvhy+e+ Kaladp0018s0264.4.p 106 TFVRRCYWLLDKSMEHIVLVHYRET 130 **********************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51437 | 72.257 | 10 | 136 | IPR005559 | CG-1 DNA-binding domain |
SMART | SM01076 | 1.2E-70 | 13 | 131 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 2.0E-44 | 16 | 129 | IPR005559 | CG-1 DNA-binding domain |
Gene3D | G3DSA:2.60.40.10 | 5.1E-6 | 358 | 447 | IPR013783 | Immunoglobulin-like fold |
SuperFamily | SSF81296 | 4.9E-15 | 360 | 447 | IPR014756 | Immunoglobulin E-set |
CDD | cd00603 | 1.68E-4 | 360 | 447 | No hit | No description |
Pfam | PF01833 | 3.5E-7 | 360 | 446 | IPR002909 | IPT domain |
CDD | cd00204 | 1.35E-17 | 519 | 655 | No hit | No description |
Pfam | PF12796 | 3.2E-8 | 538 | 625 | IPR020683 | Ankyrin repeat-containing domain |
SuperFamily | SSF48403 | 1.55E-17 | 540 | 656 | IPR020683 | Ankyrin repeat-containing domain |
Gene3D | G3DSA:1.25.40.20 | 3.5E-17 | 554 | 658 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50297 | 16.52 | 563 | 655 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 3.5E-6 | 596 | 625 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50088 | 11.728 | 596 | 628 | IPR002110 | Ankyrin repeat |
SuperFamily | SSF52540 | 2.58E-7 | 718 | 810 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
PROSITE profile | PS50096 | 6.504 | 744 | 770 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 38 | 759 | 781 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 7.071 | 760 | 789 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 0.062 | 762 | 780 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 0.0017 | 782 | 804 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 9.908 | 783 | 807 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 3.5E-4 | 786 | 804 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 7 | 864 | 886 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 8.517 | 866 | 894 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 0.083 | 867 | 886 | IPR000048 | IQ motif, EF-hand binding site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 912 aa Download sequence Send to blast |
MLCDYAELDL KSIFEEAKSR WLRPNEIHAI LFNHMYFPIH VKPVNLPKSG EIHLFDRKKL 60 RNFRKDGHNW KKKNDGKTVK EAHEHLKVGN EERIHVYYAH GQDNATFVRR CYWLLDKSME 120 HIVLVHYRET CELLDPSAAP VNSNSSSGLT ELHVPFLTYE ETESGSQQSN TSNQLEYIES 180 IENVTAVTLE RRLREINTLD WDELLVDTDP SVPIAYEEGK SGGVQQQNPV MINVSKDDGS 240 ALLMNLPTEL SSGWHSACPE TRSDSINGDI LDGSYNHAVH SQLMMEAAPN NSGTLFGGQS 300 FSITQGGGQD QDRRWMNSSL TVESPGSVND SIHESSISSA QNSMVPTIMD QPQSADQIFT 360 ITDISPEWAF SCEKTKILLT GYFHQGFGNL LNSNLYCVCG SSCVPVEIVQ TGVMRCILPP 420 HSPGQFDLYL STERLKPVSQ LKTFEYRSSL QADQNIPSDN LSEWDEFRNK MRLVRLLFSS 480 SKTLNILSAK VSEHTVNEAK KFSEKTSHTA SSWALLKQSV DENKISLHQA EEILFEQAIR 540 NRLQDWLLER IIEEQSPSDY DEQGLGVLHL CAILNYTWAV YLYSKSGLSL DFRDKYGWTA 600 LHWAAYYGRE DIVGALLSAG ARPNLVTDPT PLIPGGCTAS DLAAQKGHNG LAAYLGEEAL 660 VDHFNDMALA GNASGSIEFQ RTCSVKRETV YDEASCLKDT LAAYRTAADA AARINAAFRE 720 QSLKLRTEAV QGSNPEDEAR TIISAMKIQH AFRSFESRKK MAAALRIQYG FRTWKTRRDF 780 LNMRQQAIKI QAVFRGFQVR RHYRKIIWSV GVLEKAVLRW RFKRRGFRGL QVAPVQEITS 840 VAQEQENDVE EDFFVLGRKQ AEDRVESAVI KVQAMFRSKQ AQQEYRRMKL AHNQAKIEYE 900 GFFNHNAKME S* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 57 | 72 | KKLRNFRKDGHNWKKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:14581622, ECO:0000269|PubMed:28351986, ECO:0000305|PubMed:11925432}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269|PubMed:12218065}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002272118.2 | 0.0 | PREDICTED: calmodulin-binding transcription activator 6 isoform X1 | ||||
Swissprot | O23463 | 0.0 | CMTA5_ARATH; Calmodulin-binding transcription activator 5 | ||||
TrEMBL | A0A1R3GK40 | 0.0 | A0A1R3GK40_9ROSI; IQ motif, EF-hand binding site | ||||
STRING | VIT_05s0077g01240.t01 | 0.0 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G16150.1 | 0.0 | calmodulin binding;transcription regulators |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0018s0264.4.p |
Publications ? help Back to Top | |||
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