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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0018s0264.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | CAMTA | ||||||||
Protein Properties | Length: 946aa MW: 106941 Da PI: 6.4064 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 158 | 1.9e-49 | 50 | 164 | 4 | 117 |
CG-1 4 e.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenp 92 e k+rwl+++ei+aiL n+ + ++ ++ + pksg++ L++rkk+r+frkDG++wkkk dgktv+E+he+LKvg+ e +++yYah+++n+ Kaladp0018s0264.1.p 50 EaKSRWLRPNEIHAILFNHMYFPIHVKPVNLPKSGEIHLFDRKKLRNFRKDGHNWKKKNDGKTVKEAHEHLKVGNEERIHVYYAHGQDNA 139 559*************************************************************************************** PP CG-1 93 tfqrrcywlLeeelekivlvhylev 117 tf rrcywlL++++e+ivlvhy+e+ Kaladp0018s0264.1.p 140 TFVRRCYWLLDKSMEHIVLVHYRET 164 **********************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51437 | 72.257 | 44 | 170 | IPR005559 | CG-1 DNA-binding domain |
SMART | SM01076 | 1.2E-70 | 47 | 165 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 2.2E-44 | 50 | 163 | IPR005559 | CG-1 DNA-binding domain |
Gene3D | G3DSA:2.60.40.10 | 5.4E-6 | 392 | 481 | IPR013783 | Immunoglobulin-like fold |
SuperFamily | SSF81296 | 5.07E-15 | 394 | 481 | IPR014756 | Immunoglobulin E-set |
Pfam | PF01833 | 3.7E-7 | 394 | 480 | IPR002909 | IPT domain |
CDD | cd00603 | 1.75E-4 | 394 | 481 | No hit | No description |
CDD | cd00204 | 1.43E-17 | 553 | 689 | No hit | No description |
Pfam | PF12796 | 3.3E-8 | 572 | 659 | IPR020683 | Ankyrin repeat-containing domain |
SuperFamily | SSF48403 | 1.71E-17 | 574 | 690 | IPR020683 | Ankyrin repeat-containing domain |
Gene3D | G3DSA:1.25.40.20 | 4.6E-17 | 588 | 691 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50297 | 16.52 | 597 | 689 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50088 | 11.728 | 630 | 662 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 3.5E-6 | 630 | 659 | IPR002110 | Ankyrin repeat |
SuperFamily | SSF52540 | 2.92E-7 | 752 | 844 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
PROSITE profile | PS50096 | 6.504 | 778 | 804 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 38 | 793 | 815 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 7.071 | 794 | 823 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 0.065 | 796 | 814 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 0.0017 | 816 | 838 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 9.908 | 817 | 841 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 3.7E-4 | 820 | 838 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 7 | 898 | 920 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 8.517 | 900 | 928 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 0.086 | 901 | 920 | IPR000048 | IQ motif, EF-hand binding site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 946 aa Download sequence Send to blast |
MCAFGVDQLF DFVGSEEIGG LVMESVLLDG FQIHGFRTMN ELDLKSIFEE AKSRWLRPNE 60 IHAILFNHMY FPIHVKPVNL PKSGEIHLFD RKKLRNFRKD GHNWKKKNDG KTVKEAHEHL 120 KVGNEERIHV YYAHGQDNAT FVRRCYWLLD KSMEHIVLVH YRETCELLDP SAAPVNSNSS 180 SGLTELHVPF LTYEETESGS QQSNTSNQLE YIESIENVTA VTLERRLREI NTLDWDELLV 240 DTDPSVPIAY EEGKSGGVQQ QNPVMINVSK DDGSALLMNL PTELSSGWHS ACPETRSDSI 300 NGDILDGSYN HAVHSQLMME AAPNNSGTLF GGQSFSITQG GGQDQDRRWM NSSLTVESPG 360 SVNDSIHESS ISSAQNSMVP TIMDQPQSAD QIFTITDISP EWAFSCEKTK ILLTGYFHQG 420 FGNLLNSNLY CVCGSSCVPV EIVQTGVMRC ILPPHSPGQF DLYLSTERLK PVSQLKTFEY 480 RSSLQADQNI PSDNLSEWDE FRNKMRLVRL LFSSSKTLNI LSAKVSEHTV NEAKKFSEKT 540 SHTASSWALL KQSVDENKIS LHQAEEILFE QAIRNRLQDW LLERIIEEQS PSDYDEQGLG 600 VLHLCAILNY TWAVYLYSKS GLSLDFRDKY GWTALHWAAY YGREDIVGAL LSAGARPNLV 660 TDPTPLIPGG CTASDLAAQK GHNGLAAYLG EEALVDHFND MALAGNASGS IEFQRTCSVK 720 RETVYDEASC LKDTLAAYRT AADAAARINA AFREQSLKLR TEAVQGSNPE DEARTIISAM 780 KIQHAFRSFE SRKKMAAALR IQYGFRTWKT RRDFLNMRQQ AIKIQAVFRG FQVRRHYRKI 840 IWSVGVLEKA VLRWRFKRRG FRGLQVAPVQ EITSVAQEQE NDVEEDFFVL GRKQAEDRVE 900 SAVIKVQAMF RSKQAQQEYR RMKLAHNQAK IEYEGFFNHN AKMES* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 91 | 106 | KKLRNFRKDGHNWKKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:14581622, ECO:0000269|PubMed:28351986, ECO:0000305|PubMed:11925432}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269|PubMed:12218065}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002272118.2 | 0.0 | PREDICTED: calmodulin-binding transcription activator 6 isoform X1 | ||||
Swissprot | O23463 | 0.0 | CMTA5_ARATH; Calmodulin-binding transcription activator 5 | ||||
TrEMBL | A0A1R3GK40 | 0.0 | A0A1R3GK40_9ROSI; IQ motif, EF-hand binding site | ||||
STRING | VIT_05s0077g01240.t01 | 0.0 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G16150.1 | 0.0 | calmodulin binding;transcription regulators |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0018s0264.1.p |
Publications ? help Back to Top | |||
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