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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KZV57027.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
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Family | AP2 | ||||||||
Protein Properties | Length: 626aa MW: 69538.8 Da PI: 6.5124 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 37.2 | 7.3e-12 | 307 | 363 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d ++ g rk + g ++ +++Aa+a++ a++k++g KZV57027.1 307 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqSRKGRQ-GGYDMEDKAARAYDLAALKYWG 363 78*******************87776664446655.77***99*************98 PP | |||||||
2 | AP2 | 46.1 | 1.2e-14 | 406 | 457 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g KZV57027.1 406 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDVAAIKFRG 457 57****************988532...5************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 3.6E-9 | 307 | 363 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.51E-18 | 307 | 371 | No hit | No description |
SuperFamily | SSF54171 | 7.19E-14 | 307 | 373 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 8.5E-22 | 308 | 377 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.148 | 308 | 371 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.6E-12 | 308 | 372 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.9E-6 | 309 | 320 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.19E-18 | 406 | 467 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 4.9E-10 | 406 | 457 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.33E-26 | 406 | 467 | No hit | No description |
SMART | SM00380 | 1.1E-34 | 407 | 471 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.124 | 407 | 465 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.7E-18 | 407 | 465 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.9E-6 | 447 | 467 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007276 | Biological Process | gamete generation | ||||
GO:0010492 | Biological Process | maintenance of shoot apical meristem identity | ||||
GO:0042127 | Biological Process | regulation of cell proliferation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 626 aa Download sequence Send to blast |
MKVMGDEISN NWLGFSLSSQ DMEGSSDNAN HTQPGSNDVS NALPMSFPSG YSSYPGFHYG 60 VESENAGFYS PLTVMPLKSD GSLCLMEAIN RSQPQVMGTS TPKLEDFFGG ATMGTHNYNR 120 GGMVLSLDSM YYNHNPQSQG HNMQDFLSHD QENSRHHQIP VQEYADYIPF RGQEMYPGAE 180 NEPKDSQLSD GNLHFSTMGG DEFSGVKNWV PRNYTNSHAL EQKIGISLEE NGAESGHINA 240 VGYGDLQSLS LSMSPGSQSS CVTGSQHIPP AMADCMGFEN KKRGPEKDEQ KQIVHRKSID 300 TFGQRTSQYR GVTRHRWTGR YEAHLWDNSC KKEGQSRKGR QGGYDMEDKA ARAYDLAALK 360 YWGPSTHINF PLENYHQELE DMKNMSRQEY VAHLRRKSSG FSRGASIYRG VTRHHQHGRW 420 QARIGRVAGN KDLYLGTFST QEEAAEAYDV AAIKFRGVNA VTNFDISRYD VERIMESNTL 480 LSGEMARRNK LADSSNDSSL NVIPLNPNDS IMDSNVPKES RGSIVSDWRM ALYPSPNPKP 540 IEDFKAETGK TVNNISSSSS LITSLSSSRD GSPDKNSCLP MHFPVPPPGS KFFPAQTESS 600 NVNSWIQSAA QMRPQVPLFA AWTDAS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CAC[AG]N[AT]TNCCNANG-3'. Required for the initiation and growth of ovules integumenta, and for the development of female gametophyte. Plays a critical role in the development of gynoecium marginal tissues (e.g. stigma, style and septa), and in the fusion of carpels and of medial ridges leading to ovule primordia. Also involved in organs initiation and development, including floral organs. Maintains the meristematic competence of cells and consequently sustains expression of cell cycle regulators during organogenesis, thus controlling the final size of each organ by controlling their cell number. Regulates INO autoinduction and expression pattern. As ANT promotes petal cell identity and mediates down-regulation of AG in flower whorl 2, it functions as a class A homeotic gene. {ECO:0000269|PubMed:10528263, ECO:0000269|PubMed:10639184, ECO:0000269|PubMed:10948255, ECO:0000269|PubMed:11041883, ECO:0000269|PubMed:12183381, ECO:0000269|PubMed:12271029, ECO:0000269|PubMed:12655002, ECO:0000269|PubMed:8742706, ECO:0000269|PubMed:8742707, ECO:0000269|PubMed:9001406, ECO:0000269|PubMed:9093862, ECO:0000269|PubMed:9118807}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00088 | SELEX | Transfer from AT4G37750 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KZV57027.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011099413.1 | 0.0 | AP2-like ethylene-responsive transcription factor ANT isoform X2 | ||||
Swissprot | Q38914 | 1e-163 | ANT_ARATH; AP2-like ethylene-responsive transcription factor ANT | ||||
TrEMBL | A0A2Z7DCW7 | 0.0 | A0A2Z7DCW7_9LAMI; Uncharacterized protein | ||||
STRING | XP_009589482.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2074 | 24 | 60 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37750.1 | 1e-149 | AP2 family protein |