PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KZV55022.1

Organism

Dorcoceras hygrometricum

Taxonomic ID

472368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras

Family

MYB_related

Protein Properties

Length: 521aa MW: 59942.5 Da PI: 8.7216

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KZV55022.1	genome	CNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	33.4	1.1e-10	14	52	1	40
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 +g+W++eEd+ll +v+++G+++W++I++ + ++ + q+ KZV55022.1 14 KGPWSPEEDDLLQLLVQKHGPRNWSLISKSIS-KLEADQI 52 79***************************998.6766665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.172	9	66	IPR017930	Myb domain
SuperFamily	SSF46689	1.2E-8	11	51	IPR009057	Homeodomain-like
SMART	SM00717	9.0E-5	13	62	IPR001005	SANT/Myb domain
Pfam	PF00249	9.6E-10	14	53	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.6E-10	14	46	IPR009057	Homeodomain-like
CDD	cd00167	5.62E-6	16	44	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 521 aa Download sequence Send to blast
MATNVIKTDT DRIKGPWSPE EDDLLQLLVQ KHGPRNWSLI SKSISKLEAD QIIQELRTKE 60 LRSTHLEAWI SLEELISLEE RTSFGQFSLE HKTQRRSAHR DDKRSDDRYR RDDKKEDQYK 120 REDKTEERAV ERSKERSKDR RMRTRGDKRP SRKHDRKVLV AEESTKSWAD TDSESSSISS 180 SSSDSEQEEV HCLMADQTSD DEVFNFSNVE FTREDLVSAL NDMVKEYMKL SHSFEEAKAE 240 NISLKSSSIE SSSDELEDID SLKIELNKLT VENDLLRNES SELKAENSPK LNENGKADIG 300 FQRPENSKPS WLKNKLDKDK AKAAGLKPRP AVKPGFPENN TTRKTTKPQR DMWSNPSTES 360 NYKTAVNNKN KMQMLCMQPG TTAEGYNQER EPKNSMHSST EICNRICGHA GTREQIPPAG 420 TRRNTQNGVA PTNQNATVFA LNKRDKAAAG YKHATSFHVT QRIQISLKRR RLGISRYQNT 480 LRLDFTKSTN SHHETRSHNQ ISQPDLYSKY ENFQNCLKCE I

Sequence ? help Back to Top

Protein Sequence Length: 521 aa Download sequence Send to blast

MATNVIKTDT DRIKGPWSPE EDDLLQLLVQ KHGPRNWSLI SKSISKLEAD QIIQELRTKE  60
LRSTHLEAWI SLEELISLEE RTSFGQFSLE HKTQRRSAHR DDKRSDDRYR RDDKKEDQYK  120
REDKTEERAV ERSKERSKDR RMRTRGDKRP SRKHDRKVLV AEESTKSWAD TDSESSSISS  180
SSSDSEQEEV HCLMADQTSD DEVFNFSNVE FTREDLVSAL NDMVKEYMKL SHSFEEAKAE  240
NISLKSSSIE SSSDELEDID SLKIELNKLT VENDLLRNES SELKAENSPK LNENGKADIG  300
FQRPENSKPS WLKNKLDKDK AKAAGLKPRP AVKPGFPENN TTRKTTKPQR DMWSNPSTES  360
NYKTAVNNKN KMQMLCMQPG TTAEGYNQER EPKNSMHSST EICNRICGHA GTREQIPPAG  420
TRRNTQNGVA PTNQNATVFA LNKRDKAAAG YKHATSFHVT QRIQISLKRR RLGISRYQNT  480
LRLDFTKSTN SHHETRSHNQ ISQPDLYSKY ENFQNCLKCE I

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	467	471	KRRRL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KZV55022.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2Z7D5W8	0.0	A0A2Z7D5W8_9LAMI; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G23290.1	5e-16	myb domain protein 70