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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KZV40621.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
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Family | CAMTA | ||||||||
Protein Properties | Length: 896aa MW: 101053 Da PI: 8.6603 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 164 | 2.5e-51 | 11 | 128 | 2 | 118 |
CG-1 2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcy 99 ++e k rwl+++ei+aiL n+ +++++ ++ + pksg+++L++rk++r+frkDG++wkkkkdgktv+E+he+LKvg+ e ++ yYah+e++ptf rrcy KZV40621.1 11 MEEaKGRWLRPNEIYAILCNHGHFTVHVKPVNLPKSGTVVLFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNQERIHIYYAHGEDKPTFVRRCY 109 455599********************************************************************************************* PP CG-1 100 wlLeeelekivlvhylevk 118 wlL+++le+ivlvhy+e++ KZV40621.1 110 WLLDKSLEHIVLVHYRETQ 128 ****************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51437 | 75.699 | 7 | 133 | IPR005559 | CG-1 DNA-binding domain |
SMART | SM01076 | 1.3E-72 | 10 | 128 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 1.5E-45 | 13 | 126 | IPR005559 | CG-1 DNA-binding domain |
SuperFamily | SSF81296 | 6.3E-11 | 360 | 447 | IPR014756 | Immunoglobulin E-set |
CDD | cd00204 | 4.94E-16 | 545 | 655 | No hit | No description |
Gene3D | G3DSA:1.25.40.20 | 5.5E-17 | 545 | 658 | IPR020683 | Ankyrin repeat-containing domain |
Pfam | PF12796 | 6.0E-7 | 545 | 625 | IPR020683 | Ankyrin repeat-containing domain |
SuperFamily | SSF48403 | 3.89E-17 | 546 | 658 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50297 | 14.982 | 554 | 667 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50088 | 11.06 | 596 | 628 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 4.9E-5 | 596 | 625 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 2100 | 635 | 666 | IPR002110 | Ankyrin repeat |
SMART | SM00015 | 85 | 740 | 762 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 7.272 | 744 | 770 | IPR000048 | IQ motif, EF-hand binding site |
SuperFamily | SSF52540 | 7.97E-5 | 755 | 830 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
PROSITE profile | PS50096 | 6.742 | 760 | 789 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 3.2E-4 | 782 | 804 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 10.017 | 783 | 807 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 1.9E-4 | 784 | 804 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 16 | 862 | 884 | IPR000048 | IQ motif, EF-hand binding site |
SuperFamily | SSF52540 | 7.97E-5 | 862 | 890 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
PROSITE profile | PS50096 | 8.224 | 864 | 892 | IPR000048 | IQ motif, EF-hand binding site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 896 aa Download sequence Send to blast |
TWTDLDVGNM MEEAKGRWLR PNEIYAILCN HGHFTVHVKP VNLPKSGTVV LFDRKMLRNF 60 RKDGHNWKKK KDGKTVKEAH EHLKVGNQER IHIYYAHGED KPTFVRRCYW LLDKSLEHIV 120 LVHYRETQEF QGSQYVNSNS DSAASDPSAS WPSLEESDSA FGRVHYGDLT SRLEFRDSLT 180 TIKNHEQRLH EINTLEWDDL LLPDHSRNML AVHESKAEGF ELGNQYETKS CRISNNDIST 240 NKVSPESSAN SFFDQVSGRN SINNAFRSSE RYQAIGREKI ETLQVKGPGL LGEGIGLDDP 300 GQDGLQKQDS FGRWMTNIIA DSPESADCQA LEYSMLTVNQ PFTSQAVDNQ QTSSFRHVFN 360 ITELSPAWAV STEETKILVV GFFTDGRVSC TNSDLFLVCG DSIIAARVIQ DGVIRCMISP 420 QSPGVVSLYL SFDGHNPISQ VLTFEFRAPA VPKHEISSDD RPNWEEFQLQ LRLAHLMFSS 480 SKDLGAFSTK PSQNALKEAK AFAQKTSHVS NGWMSLTKIV EDSKISFPHA KDSLFELTLQ 540 NRLREWLLEK VVAGCKISER DKHGQGVIHL CAILGYTWAV YSFSCSSLSL DYRDKFGWTA 600 LHWAAYCGRE KMVAALLSAG AKANLVTDPT PGNPGGYTAA DLASKNGFDG LAAYLAETAL 660 VTQLNDMTLA GNVSGSLQPT ISGTVNSENL SEDELNLKET LAAYRTAADA AARIQVALSE 720 HSLKVRTKSI HSSNPEEEAR NIVAALKIQH AFRNHNTRKK MTAAARIQYR FRTFKMRKDF 780 LDKRQKAIKI QAAFRGFHAR RQYRKIVWSV GVLEKAILRW RLKRKGIRGI PIQPEETPKD 840 PTQEGNLEEE FFQASRKQAE DRVERSVVRV QAMFRSKKAQ EDYRRMKLAH KNVSVD |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:14581622, ECO:0000269|PubMed:28351986, ECO:0000305|PubMed:11925432}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00435 | DAP | Transfer from AT4G16150 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KZV40621.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269|PubMed:12218065}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011100788.1 | 0.0 | calmodulin-binding transcription activator 5 isoform X1 | ||||
Refseq | XP_011100789.1 | 0.0 | calmodulin-binding transcription activator 5 isoform X1 | ||||
Swissprot | O23463 | 0.0 | CMTA5_ARATH; Calmodulin-binding transcription activator 5 | ||||
TrEMBL | A0A2Z7C3Y3 | 0.0 | A0A2Z7C3Y3_9LAMI; Calmodulin-binding transcription activator 6 (Fragment) | ||||
STRING | Migut.G00093.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4565 | 22 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G16150.1 | 0.0 | calmodulin binding;transcription regulators |
Publications ? help Back to Top | |||
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