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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KZV35380.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
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Family | LFY | ||||||||
Protein Properties | Length: 401aa MW: 45300.1 Da PI: 6.5884 | ||||||||
Description | LFY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FLO_LFY | 643.2 | 3.8e-196 | 5 | 382 | 4 | 384 |
FLO_LFY 4 eafsas..lfkwdpraaaaapparlleeaavseapleaaaaaaarklr.....eleelfkayGvryltvakiaelGftvstLvdmkdeelddlmkslse 95 +afsa+ +fkwdpra +pp+r++e a++++p ++aa +++r +lee+f+ayG+ry+t+akia+lGftv+tL+dm+deel+++m+sl++ KZV35380.1 5 DAFSAAasFFKWDPRALF-PPPNRMMEAVAQPPPP-PLQQAAGGYSIRprelgCLEEMFQAYGIRYYTAAKIADLGFTVNTLLDMRDEELEEMMNSLCQ 101 446554449*****9765.7888888777666655.55556666666566777********************************************** PP FLO_LFY 96 ifrldllvGeryGikaavraerrrleeeeaekkrrkllsedeetaldalsqeglseepvqeekeaagsggeglgeaelvaaeekkseeekkkaskkkqk 194 ifr+dllvGeryGikaavraerrrleeee ++rr+lls d+++aldalsqeglsee+vq+ekeaa+sgg+g +e+va+ +k ++++k+ k + KZV35380.1 102 IFRWDLLVGERYGIKAAVRAERRRLEEEE--ARRRHLLSGDTTHALDALSQEGLSEEHVQQEKEAAVSGGGGGRVWEMVASGGRK--QRRRKNY--KGR 194 ***************************87..99999*******************************************998533..2222222..333 PP FLO_LFY 195 rkkkkelkseededeeeeededeegsgedgeerqrehPfivtepgevargkknGLDYLfdLyeqCrefLlqvqkiakerGekcPtkvtnqvfryakkag 293 + + ++eed+d+e+e ed+++ + g erqrehPfivtepgevargkknGLDYLf+LyeqCrefL+qvq+iakerGekcPtkvtnqvfryakkag KZV35380.1 195 LRM-AS-MEEEDDDDETEGPEDDDNVAGVGGERQREHPFIVTEPGEVARGKKNGLDYLFHLYEQCREFLIQVQNIAKERGEKCPTKVTNQVFRYAKKAG 291 322.22.233555555566666777777789******************************************************************** PP FLO_LFY 294 asyinkPkmrhYvhCYalhcLdeeasnalrrafkergenvGawrqacykplvaiaarqgwdidavfnahprLsiWYvPtkLrqLChlersk 384 asyinkPkmrhYvhCYalhcLdee+sn++rrafkergenvGawrqacykplvaiaarqgwdida+fnahp+LsiWYvPtkLrqLCh+ers+ KZV35380.1 292 ASYINKPKMRHYVHCYALHCLDEETSNSMRRAFKERGENVGAWRQACYKPLVAIAARQGWDIDAIFNAHPHLSIWYVPTKLRQLCHAERSS 382 *****************************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF01698 | 2.7E-202 | 1 | 383 | IPR002910 | Floricaula/leafy protein |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010077 | Biological Process | maintenance of inflorescence meristem identity | ||||
GO:0010582 | Biological Process | floral meristem determinacy | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0031490 | Molecular Function | chromatin DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0043621 | Molecular Function | protein self-association |
Sequence ? help Back to Top |
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Protein Sequence Length: 401 aa Download sequence Send to blast |
MDPADAFSAA ASFFKWDPRA LFPPPNRMME AVAQPPPPPL QQAAGGYSIR PRELGCLEEM 60 FQAYGIRYYT AAKIADLGFT VNTLLDMRDE ELEEMMNSLC QIFRWDLLVG ERYGIKAAVR 120 AERRRLEEEE ARRRHLLSGD TTHALDALSQ EGLSEEHVQQ EKEAAVSGGG GGRVWEMVAS 180 GGRKQRRRKN YKGRLRMASM EEEDDDDETE GPEDDDNVAG VGGERQREHP FIVTEPGEVA 240 RGKKNGLDYL FHLYEQCREF LIQVQNIAKE RGEKCPTKVT NQVFRYAKKA GASYINKPKM 300 RHYVHCYALH CLDEETSNSM RRAFKERGEN VGAWRQACYK PLVAIAARQG WDIDAIFNAH 360 PHLSIWYVPT KLRQLCHAER SSVAVSTSLN GGGAGGDQLL F |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2vy1_A | 1e-110 | 221 | 401 | 1 | 194 | PROTEIN LEAFY |
2vy2_A | 1e-110 | 221 | 401 | 1 | 194 | PROTEIN LEAFY |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Required for flower development. FLO may interact in a sequential manner with other homeotic genes affecting floral organ identity. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00095 | SELEX | Transfer from AT5G61850 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KZV35380.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011073600.2 | 0.0 | LOW QUALITY PROTEIN: floricaula protein | ||||
Swissprot | P23915 | 0.0 | FLO_ANTMA; Floricaula protein | ||||
TrEMBL | A0A2Z7BT25 | 0.0 | A0A2Z7BT25_9LAMI; Floricaula/leafy | ||||
STRING | Migut.I00669.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6668 | 23 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61850.1 | 1e-139 | floral meristem identity control protein LEAFY (LFY) |
Publications ? help Back to Top | |||
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