PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV33652.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family SBP
Protein Properties Length: 985aa    MW: 109762 Da    PI: 6.9406
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV33652.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP130.55.9e-41148225178
                 --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
         SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                 +Cqve+C+adls+ak+yhrrhkvC+vhska+++lv ++ qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+++
  KZV33652.1 148 VCQVEDCKADLSNAKDYHRRHKVCDVHSKATKALVGNVWQRFCQQCSRFHVLEEFDEGKRSCRRRLAGHNKRRRKTHP 225
                 6**************************************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.1E-32144210IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.026146223IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.57E-37147228IPR004333Transcription factor, SBP-box
PfamPF031102.7E-29149222IPR004333Transcription factor, SBP-box
Gene3DG3DSA:1.25.40.209.9E-9748870IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484032.64E-10748871IPR020683Ankyrin repeat-containing domain
CDDcd002043.32E-9763892No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 985 aa     Download sequence    Send to blast
MEAKFGGKLH HFFGPVAPDL KAMGKKSVEW DLNDWKWDGD LFVAAPLNSV PSDCGNKQLF  60
PTGSETPAYN GASNSFSSGS DGIERERTEL EKRRRGEVET EQVNEECGSL NLKLGGQAYP  120
VGEVDVDRSE GKSGKKTKIS GVPSSRAVCQ VEDCKADLSN AKDYHRRHKV CDVHSKATKA  180
LVGNVWQRFC QQCSRFHVLE EFDEGKRSCR RRLAGHNKRR RKTHPENVVN AATLNDERGS  240
NYLLISLLKI LSNIHSNGSD QKDNQGLLSH LLRNLANLAG TNDERNPATL LPVSQDLPIV  300
DKYLENEKDP GRDVGQGVIA PASDLTPKRM LVGNSQGGIT DDASALTKKA NNSIKANAPD  360
APIERIRQFT IDLNNVYDDS QDCMDGLEDN VALENTRNVS PSSSFWLYKD SRNTQNSGNS  420
GSSSSQSPST SSGDEQSRTD RIVFKLFGKD PSDFPLVVRK QILDWLSNSP TEIESYIRPG  480
CIILTIYLRM DNAMWEELYC DISSSLRRLL DSSNDSFWKT GWIYSRVQNH ISFVYDGQVV  540
LDTPSHLKNH QGCRISSISP IAVCASESVQ FFVKGSNFSL VTSRLLCTID GKYLAQENCG  600
ARTGSAESFM EHDEIQSLNF SCTIPNIVGR GFIEVEDQGL SSSFFPFIVA EKDVCLEICT  660
LESIVGVTDG DTKKFEARNQ ALEFIHEMGW LLQRSRLKCR LGESSFNVGL FPLKRFRWLV  720
EFSIDHDWCA VVEKLLSIFF DGTVDSGKHT SILLALLDMG LLHQAVRRNC KSMVEFLLEY  780
RLSESFNKLG PKQNQAHDDD QYMFRPDSVG PGGLTPLHIA ACLDGRENVL DALTEDPRSV  840
GIDAWKNAKD STGLTPHDYA CFRGHYSYIH LVQRKLNKKL LNSHIVVDIP DNTVPAKQKI  900
GNTSKLGKSG VAFETERAQS CSECERKMGS YGNWRSSVRI YKPAMLSMVA IAAVCVCAAL  960
LFKTSPVVHP CFRPFRWELL KYGSE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A6e-301482221084squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1217223KRRRKTH
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000269|PubMed:16554053}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00633PBMTransfer from PK06791.1Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV33652.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020547976.10.0LOW QUALITY PROTEIN: squamosa promoter-binding-like protein 1
SwissprotQ9S7P50.0SPL12_ARATH; Squamosa promoter-binding-like protein 12
TrEMBLA0A2Z7BH050.0A0A2Z7BH05_9LAMI; Squamosa promoter-binding-like protein 1-like
STRINGSolyc05g053240.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18712466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60030.10.0squamosa promoter-binding protein-like 12
Publications ? help Back to Top
  1. Jung S, et al.
    Synteny conservation between the Prunus genome and both the present and ancestral Arabidopsis genomes.
    BMC Genomics, 2006. 7: p. 81
    [PMID:16615871]
  2. Jorgensen SA,Preston JC
    Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis.
    Mol. Phylogenet. Evol., 2014. 73: p. 129-39
    [PMID:24508602]
  3. Chao LM, et al.
    Arabidopsis Transcription Factors SPL1 and SPL12 Confer Plant Thermotolerance at Reproductive Stage.
    Mol Plant, 2017. 10(5): p. 735-748
    [PMID:28400323]