PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KZV29369.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
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Family | LSD | ||||||||
Protein Properties | Length: 155aa MW: 15999.7 Da PI: 8.3655 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 44.3 | 3e-14 | 7 | 31 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggCrt+L YPrGA++VRCa+C V KZV29369.1 7 CGGCRTVLLYPRGATNVRCAICSMV 31 **********************876 PP | |||||||
2 | zf-LSD1 | 36.8 | 6.4e-12 | 46 | 70 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggCrtlL+ GA sVRC++C+tV KZV29369.1 46 CGGCRTLLMHAQGAASVRCSCCHTV 70 ************************9 PP | |||||||
3 | zf-LSD1 | 31.7 | 2.5e-10 | 88 | 105 | 1 | 18 |
zf-LSD1 1 CggCrtlLsYPrGApsVR 18 Cg+Cr++L+YP+GApsV+ KZV29369.1 88 CGNCRIMLMYPAGAPSVH 105 *****************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 7.9E-14 | 4 | 32 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.4E-12 | 7 | 31 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 4.8E-15 | 43 | 73 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 6.6E-11 | 46 | 70 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 2.0E-6 | 85 | 104 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 8.0E-8 | 88 | 105 | IPR005735 | Zinc finger, LSD1-type |
Sequence ? help Back to Top |
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Protein Sequence Length: 155 aa Download sequence Send to blast |
MQSQLMCGGC RTVLLYPRGA TNVRCAICSM VTPAPLAGMD MAQLICGGCR TLLMHAQGAA 60 SVRCSCCHTV NLVPAVATMP NHVAHVSCGN CRIMLMYPAG APSVHQTVGN SPPTSKPSTS 120 SATVPSQNQT VVVQNPMTVD ESGKLVSNVV VGVTT |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KZV29369.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011096731.1 | 2e-72 | protein LSD1 | ||||
Swissprot | Q2QMB3 | 2e-54 | LOL2_ORYSJ; Protein LOL2 | ||||
TrEMBL | A0A2Z7BC37 | 1e-106 | A0A2Z7BC37_9LAMI; Uncharacterized protein | ||||
STRING | XP_009758570.1 | 2e-69 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1679 | 24 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G20380.7 | 1e-46 | LSD family protein |
Publications ? help Back to Top | |||
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