PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV28842.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family NF-YC
Protein Properties Length: 583aa    MW: 66848.7 Da    PI: 7.7471
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV28842.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC161.61.2e-5081179196
       NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdiv 96 
                 ql+ fw++q   ie++ +fknh+lPlarikki+kadedv+misaeaPv+++kace+filelt+r+w+h+e+nkrrtl+k+diaaa++rtd+fdfl+d+ 
  KZV28842.1  81 QLQGFWASQmqeIEQTIEFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTMRAWIHTEDNKRRTLQKNDIAAAISRTDVFDFLLDQA 179
                 799****99777899**********************************************************************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471136.29E-3471175IPR009072Histone-fold
Gene3DG3DSA:1.10.20.101.1E-3696167IPR009072Histone-fold
PfamPF008084.0E-21103166IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamilySSF813831.18E-6221266IPR001810F-box domain
Gene3DG3DSA:1.20.1280.502.9E-5222259No hitNo description
TIGRFAMsTIGR016407.9E-13309493IPR017451F-box associated interaction domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 583 aa     Download sequence    Send to blast
MNSSDQQQVP LNQNRKQQLA AVGGVAPSGQ MAYATSYQTT PMVATGTPAT AVSSPTNFPP  60
QQQLGNYHPA QQFHSQQQQQ QLQGFWASQM QEIEQTIEFK NHSLPLARIK KIMKADEDVR  120
MISAEAPVIF AKACEMFILE LTMRAWIHTE DNKRRTLQKN DIAAAISRTD VFDFLLDQAA  180
LYGGQPSRPP LSFMAWPQLH NQQQPPEQQP GDCCCKRQKR CLPQEMVFHI LLQLPAQVIG  240
DVMRHVCREW NLMIRSPDFI HHHLRNSKCG ILLQQFGTNH NAIYVEIRRG CVEIFKFDCG  300
LKRLGSTGCN GLVLSCHSKY RDVICVSNPL TKQQVFLPPY FHDIGFLRQF ALAFVEASME  360
YKVVDAFGLG SFTTMRIAML TIGVDRVWRH IDIEHLALTT GDAPRGFPLV TGGYVHWIGR  420
TFVLTLNVET ETFYKFPMPP LEKRIGEFLP MGSNLSVVYG SNVFFKDVWE MNSETGEWTK  480
LFSFDLEPVH YRLKDFFGKY EELIVPMGWL AVREVLAFTT LYDQTRFIAY NFKTGEIQSF  540
DLDTYGPNND KKEYYFFHHV NSLVWLEGGL QVEKRWGNKN SRL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B4e-4988177291NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1153159RRTLQKN
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV28842.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2Z7B3A50.0A0A2Z7B3A5_9LAMI; Nuclear transcription factor Y subunit C-2
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.21e-54nuclear factor Y, subunit C2