PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KXZ54653.1
Organism
Gonium pectorale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Gonium
Family MYB
Protein Properties Length: 476aa    MW: 47309 Da    PI: 5.3204
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KXZ54653.1genomeGPGRPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.61.2e-171661147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+WT+eEd +l ++v   G+++W++Ia++++ gR++k+c++rw++ 
       KXZ54653.1 16 KGPWTPEEDAILRQLVLSQGPRNWTSIASCIP-GRSGKSCRLRWLNQ 61
                     79******************************.***********996 PP
2Myb_DNA-binding51.72e-1669110245
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      g++++eEd  ++ a+ q+G++ W++Ia++++ gRt++++k+rw+
       KXZ54653.1  69 GPFSAEEDAVILWAHMQYGNK-WASIAKHLP-GRTDNHIKNRWN 110
                      89*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.641166IPR017930Myb domain
SuperFamilySSF466894.23E-3014109IPR009057Homeodomain-like
SMARTSM007171.5E-151564IPR001005SANT/Myb domain
PfamPF002495.3E-171661IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.8E-251769IPR009057Homeodomain-like
CDDcd001675.24E-141860No hitNo description
PROSITE profilePS5129420.01967117IPR017930Myb domain
SMARTSM007171.7E-1367115IPR001005SANT/Myb domain
PfamPF002496.0E-1469110IPR001005SANT/Myb domain
CDDcd001672.33E-1070113No hitNo description
Gene3DG3DSA:1.10.10.602.8E-2370116IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0010200Biological Processresponse to chitin
GO:0042742Biological Processdefense response to bacterium
GO:0046686Biological Processresponse to cadmium ion
GO:0050832Biological Processdefense response to fungus
GO:2000022Biological Processregulation of jasmonic acid mediated signaling pathway
GO:2000031Biological Processregulation of salicylic acid mediated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    Send to blast
MDALGYDAHG DDDVTKGPWT PEEDAILRQL VLSQGPRNWT SIASCIPGRS GKSCRLRWLN  60
QLSPAVKSGP FSAEEDAVIL WAHMQYGNKW ASIAKHLPGR TDNHIKNRWN CTLKKKHSDI  120
MAQLRNETGP DGVVSIAAIH NVLISQQQGG SRGPLIRSPA PGAPKGGPPA FINPMAALSG  180
LGRDATGPAA LLPPGLPPAL NGPLGAGLPG GLPPGLPPGL PPGLAAGLPP MMMGTMANAA  240
ALADQERRLR LAGAGGGASA FSLYGNGAVK EEGRGTKRSR RDGEQGTEDA ESDEDSAAVA  300
LKQLAHQDPR DDGREGDGNG NGAGSNGKAS AGANGERGAG ATEDGDDEDG AGGRTNDGEE  360
DEDGEGDDED GGRDGSRAGP GPSSGKSQRL GSKSEGGGKN GKSAGGGLSG ALAVLAPTGS  420
GGAGGGAAAG DPNAVAAAAA AAAAAAAAAN PNIPLPPSAA STYGSCSTSC LRRSCS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A7e-34131161104MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00596DAPTransfer from AT5G67300Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A150GY240.0A0A150GY24_GONPE; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1516114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67300.11e-44myb domain protein r1