PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN540439.1_FGP001
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family FAR1
Protein Properties Length: 530aa    MW: 59881.6 Da    PI: 9.6889
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN540439.1_FGP001genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR145.32.9e-14295381191
               FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgk...wevtkleleHnHe 88 
                        +fY++YA+++ F+++ks+s+k         r+ +C++eg++ ++  +  ++++ r++++tgCka +kv+ ++ dg+    + + ++l+HnH+
  KN540439.1_FGP001 295 NFYQRYAYHASFDIKKSRSRKA-------IREVCCNREGRHVSKVAD-CDREQYRSSKKTGCKAYVKVRHNYvDGVvtsVVFDVVDLQHNHP 378
                        6****************99998.......6889**********9999.99999******************985541113445667****** PP

               FAR1  89 lap 91 
                        l+p
  KN540439.1_FGP001 379 LTP 381
                        986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF540011.28E-781150No hitNo description
SuperFamilySSF540011.28E-7181263No hitNo description
PfamPF031011.5E-9295381IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 530 aa     Download sequence    Send to blast
MRWRVAGSLE EVQQRLQVET TDDTEGVNST PWSQPKRFIQ KPARFVSPVV VGNPQPTTRI  60
SASIQLREFM LKNVDRLKSV KLLEIDSSVA YASDVVESFS NGNLTDGLFI DASSSMLFKD  120
DMRIKLDTFG KRIFIPTNLS YLLNIDLIKH NGVTQPFSAD ALNSRLEEFI RQINTSKAQL  180
RINVMDSNNY PLIGTLVSDH HGALSKRIVK RLSDALHKVV PKRFCRFGGF GKNKMNCARM  240
AICSNDCAFY VMKYMEAYDG SREPIETLNI PGACVAPHMV PTEGMSFATY DEAYNFYQRY  300
AYHASFDIKK SRSRKAIREV CCNREGRHVS KVADCDREQY RSSKKTGCKA YVKVRHNYVD  360
GVVTSVVFDV VDLQHNHPLT PSPSTIKILL WRSWLGGMFC THLHLAFVHM QLEKIPAAYI  420
LKRYTKKAKS DMPFDRRDRD STGPDGVEEN YRSNMMIIEA FGVVKAACKS KVAYDRAMAV  480
LKGLRSQVED IPRDTPVAEG TNTQDSRAGR VETSEISRVP PPKSHTKGST
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN540439.1_FGP001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0047340.0AP004734.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OSJNBa0026P23.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
GenBankCP0126140.0CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB8BK481e-169B8BK48_ORYSI; Uncharacterized protein
STRINGORGLA03G0393200.11e-154(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP142547
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80010.18e-09FAR1-related sequence 8