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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN540386.1_FGP003 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 489aa MW: 54233.1 Da PI: 5.8341 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 106.6 | 3.1e-33 | 129 | 268 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkk..vegkk...leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk.... 79 lp+G++F+Ptd+el+++ L+k+ v +k +++ +i++v+ i++++P++Lp vk++ + +fF+++ k+y+tg rk+r+++ KN540386.1_FGP003 129 LPRGVKFDPTDQELLWHLLAKHgkVGAKAhpfIDE--FIPTVEeddgICYTHPQKLP-GVKQDGSVSHFFHRTFKAYNTGIRKRRKINtgdl 217 699************99998862255555444233..2444422245**********.677888899******************8663344 PP NAM 80 .sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 + +W++tgk+k+v++ +g++ g+kk++v+y + + k+ekt+Wvmh+y+l KN540386.1_FGP003 218 aDVRWHKTGKTKPVVV-DGKHLGCKKIMVLYmsTMKGGKPEKTNWVMHQYHL 268 4667************.999***********6534666777*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 7.85E-38 | 114 | 287 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 29.661 | 129 | 287 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.7E-14 | 130 | 268 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000077 | Biological Process | DNA damage checkpoint | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010332 | Biological Process | response to gamma radiation | ||||
GO:0040020 | Biological Process | regulation of meiotic nuclear division | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 489 aa Download sequence Send to blast |
MDAVQPSNAS INRVHLVYVL VRRLALVGSL VGRGGLRLPA GGAGAAMTGC IVLFMRPGVR 60 TASYIRGTVC SCLRTSWIID SHRIASKIKN ASGSVDASKH KWVSNPTKAC PRCNHIIDNS 120 DVVHQWPGLP RGVKFDPTDQ ELLWHLLAKH GKVGAKAHPF IDEFIPTVEE DDGICYTHPQ 180 KLPGVKQDGS VSHFFHRTFK AYNTGIRKRR KINTGDLADV RWHKTGKTKP VVVDGKHLGC 240 KKIMVLYMST MKGGKPEKTN WVMHQYHLGT GEDEVEGQYV VSKLLFQQQF KPGEKNAQDL 300 TSADALESIV AEDLPNIPPL PLEEHVFTNQ ELEVLEKSET ITDQGKETSE INNEDNAVED 360 VAHMATEKPE DGDNPSSQDP KWWEGESQFL LDSQQLAENL AICDEFLQSQ SQTSCGGGDD 420 ETDKIKPRLA VYAQLPVEDL KKDLEECQRL DPSDGTNLEL ENASEFRLSQ IEFSQDSFTT 480 AWAGGKVID |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor regulating the transcriptional activation response to gamma irradiation (PubMed:19549833). Required for stem-cell death induced by UVB or by gamma irradiation (PubMed:20634150). Not required for ATM activation, but participates in pathways governed by both ATM and ATR sensor kinases (PubMed:19549833). Involved in DNA damage response (DDR) system that regulates cell cycle arrest (PubMed:24399300). Functional homolog of animal p53 (PubMed:24736489). Regulates SMR5 and SMR7 transcription (PubMed:24399300). Regulates DNA repair and cytokinin signaling separately and plays a key role in controlling lateral root formation under genotoxic stress. {ECO:0000269|PubMed:19549833, ECO:0000269|PubMed:20634150, ECO:0000269|PubMed:24399300, ECO:0000305|PubMed:24736489}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN540386.1_FGP003 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by zeocin or ionizing radiation treatment. {ECO:0000269|PubMed:23907539}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK060434 | 0.0 | AK060434.1 Oryza sativa Japonica Group cDNA clone:001-011-B08, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015640881.1 | 0.0 | SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
Swissprot | Q6NQK2 | 1e-138 | NAC8_ARATH; SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
TrEMBL | B9FSN1 | 0.0 | B9FSN1_ORYSJ; Uncharacterized protein | ||||
STRING | ORUFI06G10770.1 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6785 | 36 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25580.1 | 1e-140 | NAC family protein |