PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN540216.1_FGP002
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 146aa    MW: 16760.1 Da    PI: 9.274
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN540216.1_FGP002genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.23.8e-082568348
                       SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       ++T+ +d+ l++++ +lG + Wk I r +  gRt    k+rw+ ++
  KN540216.1_FGP002 25 PFTARDDDELLRLHYRLGDR-WKEIGRAVY-GRTSRVMKHRWRELR 68
                       79****************99.********9.***********9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.909121IPR017930Myb domain
SuperFamilySSF466891.8E-16169IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.0E-6129IPR009057Homeodomain-like
PROSITE profilePS500907.3641868IPR017877Myb-like domain
SMARTSM007172.4E-42270IPR001005SANT/Myb domain
CDDcd001675.22E-52567No hitNo description
PfamPF002493.3E-62567IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.8E-93068IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 146 aa     Download sequence    Send to blast
MPRRSARSCR DRWRHHLARD VYHRPFTARD DDELLRLHYR LGDRWKEIGR AVYGRTSRVM  60
KHRWRELRRS GFPLAAAARK EQALAMVDNM VESEVDESDQ SLPPPELQRS LADALASSFG  120
YCSLAHEHAM DPLAGSLALG FACMAV
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN540216.1_FGP002
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0052000.0AP005200.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0673E01.
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015645964.17e-93transcription factor MYB73
TrEMBLA0A0E0I0501e-98A0A0E0I050_ORYNI; Uncharacterized protein
STRINGONIVA07G11150.12e-99(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125692035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23290.11e-09myb domain protein 70