PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | KN539415.1_FGP004 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | GRAS | ||||||||
Protein Properties | Length: 334aa MW: 37870.4 Da PI: 4.7866 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 111.1 | 1.5e-34 | 194 | 329 | 236 | 373 |
GRAS 236 PkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpv 327 +k++ vv + ++++ F++rf eal +ysa fd+l+a++pr++++r +Er +lgr + nv+acega+r+ r et+++W+ r ++aG+k++ KN539415.1_FGP004 194 SKLMCVV--NGAYGAPFFVTRFREALFFYSAHFDMLDATIPRDKDDRLLIERDMLGRCALNVIACEGADRVDRPETYKQWQVRNHRAGLKQL 283 5555555..5678999**************************************************************************** PP GRAS 328 plsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 pl+ ++++ ++ ++ + + + ++ ++++l++gWk+r L+++S W KN539415.1_FGP004 284 PLEAEVVELVRGKVKSLYHKDFVIDVDHNWLLQGWKGRILYAMSTW 329 ******************888************************* PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 16.153 | 1 | 310 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 5.3E-32 | 194 | 329 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 334 aa Download sequence Send to blast |
MAAASKQEEL VVVVEQPFSP SLFLDLPPTP HQHHDDDPNN VNDDLLLPFI SRILMEDDID 60 DKFFYQFPDH PALLQAQQSY AQILHAPATS SSSDDTTINN NTTNSSDHDA DTQSQSAPDD 120 MEMLNMAFLK GREEATKFLP TNNTLFSDLK AEPVLDIQPT FMFGPSDGGG GRGRKNRHAE 180 LEEDHLEAET SRSSKLMCVV NGAYGAPFFV TRFREALFFY SAHFDMLDAT IPRDKDDRLL 240 IERDMLGRCA LNVIACEGAD RVDRPETYKQ WQVRNHRAGL KQLPLEAEVV ELVRGKVKSL 300 YHKDFVIDVD HNWLLQGWKG RILYAMSTWV SHHP |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | KN539415.1_FGP004 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC137064 | 0.0 | AC137064.4 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBb0003C04 map S10003, complete sequence. | |||
GenBank | AP014967 | 0.0 | AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015615829.1 | 4e-93 | scarecrow-like protein 9 | ||||
TrEMBL | I1R2B1 | 8e-92 | I1R2B1_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA11G0190300.1 | 1e-92 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP37416 | 2 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G29065.1 | 3e-55 | GRAS family protein |