PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538748.1_FGP012
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 694aa    MW: 78504.4 Da    PI: 9.1423
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538748.1_FGP012genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.76.2e-094678337
                       SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-H CS
    Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtl 37
                        W+++E  ++++a +++G++ Wk++++ +g g+++
  KN538748.1_FGP012 46 QWSKDELMRFYEAYRRHGKN-WKKVSASVG-GKSA 78
                       6*****************99.*********.9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129310.914299IPR017884SANT domain
SuperFamilySSF466898.97E-94289IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.2E-44681IPR009057Homeodomain-like
PfamPF002492.1E-74679IPR001005SANT/Myb domain
CDDcd001671.62E-44778No hitNo description
PfamPF065842.2E-27398492IPR033471DIRP domain
SMARTSM011359.0E-26398499IPR033471DIRP domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 694 aa     Download sequence    Send to blast
MGPAKGSRTI TKITIKGYDD RQHDEDPNSS SKVKLKKRKM SDLGPQWSKD ELMRFYEAYR  60
RHGKNWKKVS ASVGGKSADT VEALYSVHRT FLSLPEREGT AMGFVALVTG HHNVSDESKS  120
HKGSDQTVRA SGKVRKREAT GQKEKEAPHA HRSYHERRTS GLSSFKKRYY GELVKNIPRH  180
PSGKRTPRVP VIFPADMNVA HAGIPETENA INCTKKACGA TNNELECSSD GSPGISESAK  240
FVQGQTFLET KGTGSLKKRR IEQSMEQGQT IKDEHETAMV AKEGNDLTEY QRLTNLFSPD  300
EMLVLDVLES LVTVPSKISE PKINIPSGTL GRDDSALSHR REEGPSVKRS KQGKQVGECS  360
ASKTRNKRRK KLIAEEARRL QHCLSSESLR RWCTYEWFYS AVDYPWFMDN EFVNYLNFAN  420
LSHLSRLTRS EWSTIRSSLG KPRRFSDHFL AAEKDKLENY RKKVRQYYAL LSEDSWDSLP  480
PDLARPFSIG QQDRYKVQFD RPDLGVDEVK DTDCMPVNWL DNLPDDLKKS SFLSNNSHNR  540
VEVEQIPKLT SKENWDHISG EAEPSKTMHI TSDEQVEVLL SKSIFKKHYD HSLSIHGQVE  600
IAVDIERLSN KSTSGNCGPL QPLQSVDDNH FSEGRHPPPN IAGVLERACL MLRPSCAENL  660
PIYNEIENFI AVIKNQILAL VPSASSNARL PMYM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1344351PSVKRSKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538748.1_FGP012
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0644720.0AK064472.1 Oryza sativa Japonica Group cDNA clone:002-110-H06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619153.10.0protein ALWAYS EARLY 2 isoform X2
TrEMBLA0A0E0MSK50.0A0A0E0MSK5_ORYRU; Uncharacterized protein
STRINGOMERI01G06240.20.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP86963038
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21430.25e-52DNA binding