PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN538686.1_FGP012 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ERF | ||||||||
Protein Properties | Length: 308aa MW: 33841.1 Da PI: 8.2903 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 50.8 | 4.1e-16 | 115 | 167 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 s y+GV+++++ grW A+I + +k +lg+f t+eeAa+a++ a++k++g+ KN538686.1_FGP012 115 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDVAALKFRGA 167 57****************988532...5*************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 9.282 | 1 | 80 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.54E-6 | 52 | 81 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 4.8E-7 | 53 | 81 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.83E-18 | 115 | 175 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 5.15E-12 | 115 | 176 | No hit | No description |
Pfam | PF00847 | 3.0E-11 | 115 | 166 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.48 | 116 | 174 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.4E-32 | 116 | 180 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.7E-19 | 116 | 174 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.2E-5 | 117 | 128 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.2E-5 | 156 | 176 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 308 aa Download sequence Send to blast |
MGFWGSRKPG AKNVILICIF FSEPVVPFFL RKDYQWFHDS DTVTCCFFAF SGYDIEDKAA 60 RAYDLAALKY WGASATTNFP KESYVKEIEE MQKMSKQELV ASLRRKSSGF SRGASIYRGV 120 TRHHQHGRWQ ARIGRVAGNK DLYLGTFATE EEAAEAYDVA ALKFRGANAV TNFEPSRYNL 180 EAISQSDLPI SVSGRRHNSS SNSSKPAPEA GGQIALMSSP PISQQSSSAP PYLLHNLLQF 240 QPCGPPYAPP PPPPPPPQAL PLPGSYNFAE PVGFYWPYGD GEEQKVQLNS SMVGMASGGF 300 LHLANAAN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis. {ECO:0000269|PubMed:12172019}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN538686.1_FGP012 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK109839 | 0.0 | AK109839.1 Oryza sativa Japonica Group cDNA clone:002-148-D11, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015629274.1 | 1e-135 | AP2-like ethylene-responsive transcription factor AIL7 | ||||
Swissprot | Q6PQQ4 | 4e-73 | BBM_ARATH; AP2-like ethylene-responsive transcription factor BBM | ||||
TrEMBL | A0A0D9Z6C6 | 0.0 | A0A0D9Z6C6_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM03G15150.1 | 0.0 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13579 | 26 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65510.1 | 9e-66 | AINTEGUMENTA-like 7 |