PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN48278.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | MYB | ||||||||
Protein Properties | Length: 305aa MW: 34184.2 Da PI: 6.3604 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.9 | 8.7e-17 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEde+l +++++ G+g +W + +++ g++R++k+c++rw++yl KHN48278.1 14 KGPWSPEEDEKLREYIEKNGTGgNWIALPQKAGLKRCGKSCRLRWLNYL 62 79*********************************************97 PP | |||||||
2 | Myb_DNA-binding | 37.6 | 5.2e-12 | 69 | 111 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g ++++Ed ++ + + G++ W+ Ia+ ++ gRt++++k++w++ KHN48278.1 69 GEFSEDEDRIICTLYASIGSR-WSIIASQLP-GRTDNDIKNYWNT 111 789******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.406 | 9 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.41E-28 | 11 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.5E-12 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.5E-16 | 14 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.3E-24 | 15 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.82E-9 | 16 | 62 | No hit | No description |
PROSITE profile | PS51294 | 21.696 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 3.3E-12 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.9E-11 | 69 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.01E-8 | 70 | 113 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.1E-23 | 70 | 117 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 305 aa Download sequence Send to blast |
MGRAPCCDKA NVKKGPWSPE EDEKLREYIE KNGTGGNWIA LPQKAGLKRC GKSCRLRWLN 60 YLRPNLKHGE FSEDEDRIIC TLYASIGSRW SIIASQLPGR TDNDIKNYWN TKLKKKMMGM 120 NPSALKKPHQ VNLSPMLQNS TPSSSFKNNH NSYFQPHLPF TGSESISYSS LPSDNYSTFE 180 SLQNYQVSSV FMETSCSSSS DGSCNNNQIN HVKEAELGYV GDGTFGDQII GRLSYLNSGV 240 EDQDTLKLVP SNAGRVSGVT DEETRLWGES PLEYGLEEIK QLISNSSCNN FMLDDSKTGE 300 MVMYY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-25 | 14 | 117 | 7 | 108 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN48278.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT031266 | 0.0 | KT031266.1 Glycine max clone HN_CCL_52 MYB/HD-like transcription factor (Glyma13g20510.1) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001341850.1 | 0.0 | MYB/HD-like transcription factor | ||||
Refseq | XP_028196212.1 | 0.0 | transcription factor RAX2-like | ||||
TrEMBL | A0A445HFW4 | 0.0 | A0A445HFW4_GLYSO; Transcription factor MYB36 isoform A | ||||
TrEMBL | I1LZ65 | 0.0 | I1LZ65_SOYBN; MYB/HD-like transcription factor | ||||
STRING | GLYMA13G20510.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF130 | 34 | 340 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57620.1 | 9e-77 | myb domain protein 36 |
Publications ? help Back to Top | |||
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