PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN41239.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 630aa    MW: 68287 Da    PI: 6.1112
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN41239.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.86e-30350408259
                 --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                  Dg++WrKYGqK+ kg+++pr+YYrC++a  Cpv+k+v+r+aed +v+++tYeg+Hnh+
  KHN41239.1 350 ADGCQWRKYGQKMAKGNPCPRAYYRCSMAsACPVRKQVQRCAEDRTVLITTYEGNHNHP 408
                 7***************************999***************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.0E-32334410IPR003657WRKY domain
SuperFamilySSF1182901.15E-26342410IPR003657WRKY domain
PROSITE profilePS5081128.805344410IPR003657WRKY domain
SMARTSM007746.2E-35349409IPR003657WRKY domain
PfamPF031065.3E-26351408IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 630 aa     Download sequence    Send to blast
MVRGGGLQSM DSDPIGSFFL HKPIVLNSFP AEDTNNKWKK HSLHHNMDAT ASNTKDNTIP  60
FQVSLRCSPN NHDDASSPPS LHNNRTEMDL FSDKNSTKDD DNNNNKVDAS ASLPDNDHHS  120
TTPPTLEFKL NTGGLNLLTT NTNSDQSMVD DEISPNSEDK RAKNEMAVLQ ADLERMKREN  180
QKLRDSLDEV TTNYSALQMH FMNLMQERKG EEGEEEQEEV YGGEKKQQLG ESGGDGILVP  240
RQFMDLGLAA NNGTSTGIEP SSSSGGRSQD RSRSPNVEVA SKELGTNDEE EKKEYGRGIE  300
REDDSPSGHA HKVPRFSPPK DNNNNSVEAE ATMRKARVSV RARSETPMIA DGCQWRKYGQ  360
KMAKGNPCPR AYYRCSMASA CPVRKQVQRC AEDRTVLITT YEGNHNHPLP PTAMAMAQTT  420
SSAARMLLSG SMSSADSIMN ANFLTGTLLP CSSSMATISA SAPFPTVTLD LTHSPNPLQF  480
PRQQHPNQLQ IGVPQNNFAN SPAASLLPQI FGQALYNNQS KFSGLQMSSS HYDADPSSQF  540
GNNQLPPHQV VPPHLADTVG AAIATDPNFT AALAAAITSI IGGAPLQHSN SSNNNNSNSN  600
NKGNMTANNS NNGNGNVASS SNNNCNNGKQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-21336411175WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN41239.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028238289.10.0probable WRKY transcription factor 31
TrEMBLA0A445KG740.0A0A445KG74_GLYSO; WRKY transcription factor 6
STRINGGLYMA06G46420.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF86634121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62300.11e-105WRKY family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]