PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN31538.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ARR-B
Protein Properties Length: 617aa    MW: 68308.6 Da    PI: 8.5196
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN31538.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like78.77.1e-25185238155
     G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                 kp+++Wtp LH+rF+ a++q+ G ekA+Pktil++m+v+ Lt+e+v+SHLQkYR+
  KHN31538.1 185 KPKVVWTPYLHNRFLLAIKQI-GLEKAVPKTILQVMNVPNLTRENVASHLQKYRI 238
                 79*******************.********************************6 PP
2Response_reg67.75.4e-23111181108
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 
                   vl+vdD+++ + ++ ++l++ gy +v +a ++  ale+l+e +  +Dl+++ + ++gm+G+e+ k  +++  +lp+i++++ g ++ + + l  Ga 
    KHN31538.1  11 VLVVDDDKTSLAIVSNILTSLGY-KVLTANSALNALEILREFRgfIDLLITELHISGMNGFEFQKYVENQF-HLPVIIMSSDGRNSVISKSLANGAA 105
                   89*********************.*******************************************9999.9************************ PP

                   EEEESS--HHHHH CS
  Response_reg  96 dflsKpfdpeelv 108
                    ++ Kpf+ ++  
    KHN31538.1 106 HYILKPFSADDFK 118
                   *******999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004486.4E-239121IPR001789Signal transduction response regulator, receiver domain
Gene3DG3DSA:3.40.50.23002.8E-289126No hitNo description
PROSITE profilePS5011033.93410125IPR001789Signal transduction response regulator, receiver domain
SuperFamilySSF521724.41E-2810126IPR011006CheY-like superfamily
PfamPF000723.6E-2011119IPR001789Signal transduction response regulator, receiver domain
CDDcd001563.48E-2412124No hitNo description
SuperFamilySSF466891.36E-17183242IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-25184242IPR009057Homeodomain-like
TIGRFAMsTIGR015575.2E-23185238IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 617 aa     Download sequence    Send to blast
MTHERVDIIS VLVVDDDKTS LAIVSNILTS LGYKVLTANS ALNALEILRE FRGFIDLLIT  60
ELHISGMNGF EFQKYVENQF HLPVIIMSSD GRNSVISKSL ANGAAHYILK PFSADDFKDI  120
WQYARKLTFQ NIEGGSIPGD NTSIQDVHSA ISSNVSKRKR KCFPRKSTQM NKEGQSGESS  180
TLVKKPKVVW TPYLHNRFLL AIKQIGLEKA VPKTILQVMN VPNLTRENVA SHLQKYRIFL  240
RKVADKGLLE GLSNRDLRSR FAYGLSASMI KDIQAKTAKS RVTAQQYMKR IAHQSVYGGI  300
ANAVKSYNHV SSVTNTPLGR SHQFPHPYHK GLNMMLHNQH GSSSDQARLR AQSSFGSNVG  360
TNNIQQNTLG SYANQPYYAQ SSYNNVGVVF PSDGVTRHGL MTSTNGLRGG VNYGGNQLMY  420
PNYASLGNQH KFSCGQGNWN IGSLNYNRSF GLINETSENV NKNVLSFGQG NFDLAQGGFA  480
STSSAGECWS KELPAENIQG NPTLHQQLQG NFAENDIGTS IGEGNVNLLD EDDFSNLFMM  540
LDEMDLLNET EENHNANDFL KSDFSSSNHA VQSLEQMGGD DGYANMEHLN RIGISNLLKP  600
CSVTRKIREN EKDAPES
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A5e-21181244164ARR10-B
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN31538.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2353840.0AC235384.1 Glycine max strain Williams 82 clone GM_WBb0112F14, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028206520.10.0two-component response regulator ARR1-like
TrEMBLA0A0B2RHT70.0A0A0B2RHT7_GLYSO; Two-component response regulator ARR2
STRINGGLYMA16G32311.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101422534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.12e-49response regulator 2
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]