PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN28284.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

WRKY

Protein Properties

Length: 188aa MW: 21031.4 Da PI: 9.8394

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN28284.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	104.5	5.9e-33	109	167	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk+++fprsYYrCt++gC+vkk+v+r ++d+ vv++tYeg H+h+ KHN28284.1 109 LDDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCNVKKQVQRLTKDEGVVVTTYEGVHTHP 167 59********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	3.0E-34	94	167	IPR003657	WRKY domain
SuperFamily	SSF118290	5.75E-30	101	168	IPR003657	WRKY domain
PROSITE profile	PS50811	29.895	104	169	IPR003657	WRKY domain
SMART	SM00774	1.5E-39	109	168	IPR003657	WRKY domain
Pfam	PF03106	7.0E-27	110	167	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 188 aa Download sequence Send to blast
MENYSMLFSV SNSSSYPIGV GSSQIGYSGQ SSNAFLGLRP SNELASDDHE KRQGGGDGNM 60 LMSQISGGSI NVSDELGGSG NSNNNKKKGE KKVRKPRYAF QTRSQVDILD DGYRWRKYGQ 120 KAVKNNKFPR SYYRCTHQGC NVKKQVQRLT KDEGVVVTTY EGVHTHPIEK TTDNFEHILS 180 QMKIYTPF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	2e-27	100	168	8	76	Probable WRKY transcription factor 4
2lex_A	2e-27	100	168	8	76	Probable WRKY transcription factor 4
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN28284.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT098641	0.0	BT098641.1 Soybean clone JCVI-FLGm-12D20 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001237357.2	1e-138	WRKY transcription factor 53
Refseq	XP_028216905.1	1e-138	probable WRKY transcription factor 75
TrEMBL	A0A0B2R835	1e-138	A0A0B2R835_GLYSO; Putative WRKY transcription factor 75
STRING	GLYMA19G26400.1	1e-138	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1156	34	110

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G13080.1	1e-58	WRKY DNA-binding protein 75

Publications ? help Back to Top
Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933]